Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g1787 ATGTACAAAGAACGAGGCTTTTCTGCCTCCAAATCGGAGGATCGGAAACGAATCAACGATGTTCTCGACAAACAGCTCGAGCGTTCCTCTCCTTCTACTTCTCGTCCCATCAATGGCAAAACCAACAAAGACAGAGAAAACAACAACACCATCAAGGATCCTCGTTCTGCTTCCGTTTCCAAAACTTCCAATATCTCTGAGGAATCTGAAACTGACAGTGAAGAGTCGGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATCTCATGGTTCTGCAATCTCAGAGGGAATGAGTTCTTTTGTGAGGTTGATGATGATTACATCCAAGATGACTTCAACCTTTGTGGGTTAAGCAGTCAAGTGCCTTACTATGATTACGCCCTTGATTTGATTTTGGATGTTGAATCTTCCCATGGTGATATGTTCACAGAGGAACAAAATGAGTTAATTGAATCGGCAGCAGAGATGCTTTATGGTATGATTCATGCAAGATACGTACTGACAAGCAAAGGAATGGCTGCAATGCTTGACAAGTACAAAAACTATGACTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCGAGGTCAAGTACCGTGAAAATATATTGTCCTAGGTGTGAAGATCTTTATTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCCTATTTTGGAACAACATTTCCACACCTTTTCTTGATGACGTATGGACAACTGAAGCCACAGAAGCCAGCTCAGGGCTATGTTCCTAGAGTTTTTGGGTTCAAACTTCACAAGCCATGA 825 0.4303 MYKERGFSASKSEDRKRINDVLDKQLERSSPSTSRPINGKTNKDRENNNTIKDPRSASVSKTSNISEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPAQGYVPRVFGFKLHKP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g1787 274 MobiDBLite consensus disorder prediction 1 24 - -
Psa4g1787 274 PRINTS Casein kinase II regulatory subunit family signature 87 103 IPR000704 GO:0005956|GO:0019887
Psa4g1787 274 PRINTS Casein kinase II regulatory subunit family signature 104 118 IPR000704 GO:0005956|GO:0019887
Psa4g1787 274 PRINTS Casein kinase II regulatory subunit family signature 159 180 IPR000704 GO:0005956|GO:0019887
Psa4g1787 274 PRINTS Casein kinase II regulatory subunit family signature 184 205 IPR000704 GO:0005956|GO:0019887
Psa4g1787 274 PRINTS Casein kinase II regulatory subunit family signature 206 227 IPR000704 GO:0005956|GO:0019887
Psa4g1787 274 PRINTS Casein kinase II regulatory subunit family signature 234 251 IPR000704 GO:0005956|GO:0019887
Psa4g1787 274 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 273 - -
Psa4g1787 274 Pfam Casein kinase II regulatory subunit 87 270 IPR000704 GO:0005956|GO:0019887
Psa4g1787 274 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 80 184 IPR016149 GO:0005956|GO:0019887
Psa4g1787 274 SMART CK_II_beta_2 87 270 IPR000704 GO:0005956|GO:0019887
Psa4g1787 274 Gene3D - 185 259 - -
Psa4g1787 274 SUPERFAMILY Casein kinase II beta subunit 85 273 IPR035991 GO:0005956|GO:0019887
Psa4g1787 274 MobiDBLite consensus disorder prediction 1 82 - -
Psa4g1787 274 ProSitePatterns Casein kinase II regulatory subunit signature. 188 219 IPR000704 GO:0005956|GO:0019887
Psa4g1787 274 MobiDBLite consensus disorder prediction 52 66 - -
Psa4g1787 274 PANTHER CASEIN KINASE II SUBUNIT BETA 1 273 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g1787 Psa-Chr4 126382631 126386172 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g1787 K03115 - gmx:100780095 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g1787 4 126382631 126386172 Psa4g1787 4 126382631 126386172 ECH
Psa4g1787 4 126382631 126386172 Psa2g3992 2 414774286 414779042 PCT