Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0969 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCGAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAAAGTTGTGGGTACCCCAAGTATGGAGGCCCTGACCCATCAACCTATAGATATAACAGGACTGAAACGTTGGCAGGGGACTGGTTTTGCACCGCTATGAACTGCGGAGCTCACAACTATGCAAGCAGATCCAACTGCTATAGATGTGGTTCATTTAAAGATGATTATTCTTCTGGATATGGGGGTAACATGGCCGGTTCTGGAGGATATGGATCTGATTGCAGTTCTCCACCAGGATGGAAAAGTGGAGACTGGATTTGCCCAAGAATTGGCTGTGGAATGCATAATTATGCTAGCAGGACAGAATGCTACAAATGCAAAATGCCAAGGGATTATGGTGGTGCTGACTGA 423 0.4657 MSWSGGDWMCGACEHINFKKREACQSCGYPKYGGPDPSTYRYNRTETLAGDWFCTAMNCGAHNYASRSNCYRCGSFKDDYSSGYGGNMAGSGGYGSDCSSPPGWKSGDWICPRIGCGMHNYASRTECYKCKMPRDYGGAD* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0969 140 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Psa4g0969 140 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Psa4g0969 140 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Psa4g0969 140 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Psa4g0969 140 PANTHER ZINC FINGER PROTEIN 1 137 - -
Psa4g0969 140 SUPERFAMILY Ran binding protein zinc finger-like 45 79 IPR036443 -
Psa4g0969 140 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
Psa4g0969 140 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Psa4g0969 140 SUPERFAMILY Ran binding protein zinc finger-like 100 136 IPR036443 -
Psa4g0969 140 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Psa4g0969 140 Pfam Zn-finger in Ran binding protein and others 105 133 IPR001876 -
Psa4g0969 140 Pfam Zn-finger in Ran binding protein and others 49 75 IPR001876 -
Psa4g0969 140 Gene3D - 1 35 - -
Psa4g0969 140 Gene3D - 100 136 - -
Psa4g0969 140 Gene3D - 42 79 - -
Psa4g0969 140 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 137 - -
Psa4g0969 140 SMART zf_4 107 133 IPR001876 -
Psa4g0969 140 SMART zf_4 50 76 IPR001876 -
Psa4g0969 140 SMART zf_4 6 30 IPR001876 -
Psa4g0969 140 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0969 Psa-Chr4 71506523 71510941 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0969 - - gmx:100792208 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0969 4 71506523 71510941 Psa7g5854 7 484979175 484980991 ECH
Psa4g0969 4 71506523 71510941 Psa4g0969 4 71506523 71510941 ECH
Psa4g0969 4 71506523 71510941 Psa1g0619 1 38348085 38349184 PCT