Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0619 ATGAGCTGGTCAGGAGGAGATTGGATGTGTAATGCTTGCAAGCACATAAACTTCAAGAAGAGGGATGCATGTCAAAATTGTGGATACCCTAAGATTGGAGGTCCTGATCCAGAAACCTATAGATATAACTGGACTGAAACCTTAGCAGGTGACTGGTATTGCAGTGGTATGAACTGTGGAGCTCACAACTACGCTAGCAGAACAAGCTGTTATAGATGTGGTGTATTGAAAAATGGTTACTCTAGTGGATTTGGTGGGAACATGGAAGCTTCTGACTGCAATTATCCCCCTGGATGGAAAACTGGTGATTGGATTTGCACTAGATATGGGTGTGGAGTGCATAATTATGCTAGCAGAACTGAATGCTTCAAGTGCAAAACACCCAAAAGTTTTGGTAATTCAGATTAA 408 0.4191 MSWSGGDWMCNACKHINFKKRDACQNCGYPKIGGPDPETYRYNWTETLAGDWYCSGMNCGAHNYASRTSCYRCGVLKNGYSSGFGGNMEASDCNYPPGWKTGDWICTRYGCGVHNYASRTECFKCKTPKSFGNSD* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0619 135 ProSiteProfiles Zinc finger RanBP2 type profile. 100 131 IPR001876 -
Psa1g0619 135 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Psa1g0619 135 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Psa1g0619 135 SUPERFAMILY Ran binding protein zinc finger-like 3 33 IPR036443 -
Psa1g0619 135 ProSitePatterns Zinc finger RanBP2-type signature. 104 125 IPR001876 -
Psa1g0619 135 Pfam Zn-finger in Ran binding protein and others 6 28 IPR001876 -
Psa1g0619 135 Pfam Zn-finger in Ran binding protein and others 49 74 IPR001876 -
Psa1g0619 135 Pfam Zn-finger in Ran binding protein and others 100 129 IPR001876 -
Psa1g0619 135 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Psa1g0619 135 SUPERFAMILY Ran binding protein zinc finger-like 48 78 IPR036443 -
Psa1g0619 135 SMART zf_4 50 76 IPR001876 -
Psa1g0619 135 SMART zf_4 102 128 IPR001876 -
Psa1g0619 135 SMART zf_4 6 30 IPR001876 -
Psa1g0619 135 PANTHER ZINC FINGER PROTEIN 1 132 - -
Psa1g0619 135 Gene3D - 91 131 - -
Psa1g0619 135 Gene3D - 1 35 - -
Psa1g0619 135 Gene3D - 44 79 - -
Psa1g0619 135 SUPERFAMILY Ran binding protein zinc finger-like 96 132 IPR036443 -
Psa1g0619 135 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Psa1g0619 135 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0619 Psa-Chr1 38348085 38349184 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0619 - - gmx:100792208 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0619 1 38348085 38349184 Psa7g5854 7 484979175 484980991 ECH
Psa1g0619 1 38348085 38349184 Psa1g0619 1 38348085 38349184 ECH
Psa4g0969 4 71506523 71510941 Psa1g0619 1 38348085 38349184 PCT