Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0440 ATGATGGTGGAAACCTCAATGCTAGGGCGCTTCCACCACCAAAGACTCGACTTTAAACGCTGCGTTCCGGCATTCATAACCTCACACAAGACCCTCTTCATGATTCTATGGATCGCCGCATTCCTATCGGTTTTCATTTGGCAGAGAAACATGGTGGTTGGTGGAATTTTGTTTTTCGGCCGGGTTGCGGCGAGGCCGATTCCGATGATGAGACCGGTGGCTTTCAATTTGACGGATTTTGGAGGTGTGGGTGATGGGGTTACTCTCAATACTGAAGCATTTGAGAGAGCTGTTTCTGCTATTTCTAAATTCGGGAACAAAGGTGGGGGCCAGCTTAATGTTCCTCCTGGTCGTTGGCTCACTGCGCCATTCAATCTTACCAGCCATATCACTTTGTTTCTAGCTCAAGATTCTGTTATTCTTGCCATTGATGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATACGGGTATGGAAGGGAGCGTCCCGGGCCTCGATATGGCAGTTTGATTCATGGTCAGAATCTTAAAGATGTTGTGATAACAGGGCACAATGGCACCATAAATGGACAAGGACAAGCATGGTGGAAAAAATTTCGCCAAAAGCGTCTCAACTACACAAGGGGACCACTTGTTCAGATCATGTGGTCTAGTGACATTGTAATCACTAATATTACTTTACGTGACTCTCCTTTCTGGACACTTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTTACAATTTTGGCTCCTATAATTGATGCTCCAAATACCGACGGCATAGATCCTGATTCTTGCGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGTTGGGATCAGTATGGAATTGCTTATGGAAGACCTTCCATGAATATTATGATCCGAAACCTCGTTGTTCGCTCTATGGTTAGTGCTGGTATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACATCACGGTAGAGAATCTTCGCGTGTGGGATTCTAGACGTGGCGTGAGGATAAAGACTGCACCTGGGCGAGGTGGATACGTGCGGCAAATAACTTATCGGAATATAACATTTGAGAATGTCCGTGTTGGAATTGTGATGAAAACAGATTACAATGAACACCCTGATGATGGATATGACCCTACAGCACTTCCAGATATAAGAGACATTAGCTTCACAAGCATCTATGGACATGGAGTTCGTGTGCCGGTACGTATTCATGGCAGCGAAGAGATTCCCGTGAGAAATGTAACTTTTCGAGAAATGTCAGTTGGGTTAACCTACAAGAAAAAGCACATATTTCAGTGTGCATTTGTACACGGCCGTGTAATAGGAACCATTTTCCCCTCTCCATGCGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTTGTTAAACATTCCATGTCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1482 0.4413 MMVETSMLGRFHHQRLDFKRCVPAFITSHKTLFMILWIAAFLSVFIWQRNMVVGGILFFGRVAARPIPMMRPVAFNLTDFGGVGDGVTLNTEAFERAVSAISKFGNKGGGQLNVPPGRWLTAPFNLTSHITLFLAQDSVILAIDDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKFRQKRLNYTRGPLVQIMWSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPIIDAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNITVENLRVWDSRRGVRIKTAPGRGGYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPTALPDIRDISFTSIYGHGVRVPVRIHGSEEIPVRNVTFREMSVGLTYKKKHIFQCAFVHGRVIGTIFPSPCENLDRYNEQGQLVKHSMSQNVTDIDYDF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0440 493 Pfam Glycosyl hydrolases family 28 171 453 IPR000743 GO:0004650|GO:0005975
Psa4g0440 493 Gene3D - 63 454 IPR012334 -
Psa4g0440 493 PANTHER POLYGALACTURONASE-RELATED 22 491 - -
Psa4g0440 493 PANTHER PECTIN LYASE-RELATED 22 491 - -
Psa4g0440 493 SUPERFAMILY Pectin lyase-like 65 466 IPR011050 -
Psa4g0440 493 SMART pbh1 242 269 IPR006626 -
Psa4g0440 493 SMART pbh1 361 382 IPR006626 -
Psa4g0440 493 SMART pbh1 395 417 IPR006626 -
Psa4g0440 493 SMART pbh1 332 353 IPR006626 -
Psa4g0440 493 SMART pbh1 304 326 IPR006626 -
Psa4g0440 493 SMART pbh1 270 291 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0440 Psa-Chr4 26786629 26791084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0440 2 492 Glycoside Hydrolase AT1G19170 73.663 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0440 - - gmx:100818529 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0440 4 26786629 26791084 Psa4g0440 4 26786629 26791084 ECH
Psa4g0440 4 26786629 26791084 Psa1g3161 1 277778827 277782011 PCT