Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3161 ATGGTGGTGTTTACCTCTCACAAAAGTACAAGTTTCTTCTTTGTTTTTCTATGTGTTGCAGCTCTTGGTTCGGTTTTTTTGGTGTGGCAAAAGAATGTGATTAACGGGTTTTTGGTTTTGGGTGGAGAAAGGGTTTGGGAGTCACCGAAGCTGAGGCCTGTGGTTTTCAATTTGACTGATTTTGGTGGGGTTGGTGATGGGGTTACTGTTAATACTCAGGCTTTTGAAAGAGCTGTTTCTGTTATATCTAAGTTTGGGGATAAGGGTGGTGCTCAGTTGAATTTGAATGTGCCACCTGGTTTTTGGCTTACTGCACCGTTTAATCTCACTAGTCATATGACTCTTTTTCTTGCTCATGATGCTGTCATTCTTGGAATTCAGGATGAAAAATATTGGCCATTGATGCCGGCATTGCCTTCATATGGATACGGTAGGGAGCGTCCTGGGCCGCGGTATAGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTGATAACAGGGCATAATGGTACCATAGACGGACAAGGACAGACATGGTGGACCAAACATCTCCATAAGCTTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCCAGCGACATCGTGATCTCAAATATTACTCTGCGTGACTCTCCGTTTTGGACTCTTCATCCATATGACTGCAAGAACGTTACTATAAAAAATGTTACGATATTGGCTCCCGTATATCATGCTCCGAATACTGATGGCATTGATCCAGATTCTTGCGAGGATATGTTGATAGAGGATTGTTACATAAGTGTCGGGGATGATGCAATTGCGATAAAAAGCGGCTGGGATCAATATGGAATTGCTTACGGAAAGCCTTCTAAAAACATTCTAATCCGAAACCTTGTCGTTCGTTCTAATGTCAGTGCTGGCATCTCCATAGGAAGCGAGATGTCTGGTGGAGTATCCAACGTCACCATCGAAAACATTCTTGTATGGGAATCTCGACGTGCCATCAGGATCAAGACCGCACCTGGAAGAGGCGGATACGTTCGCCAAATAACTTACCGGAATCTAACTTTCCATAACGTCCGTGTTGGAATTGTTATCAAGACCAATTACAACGAACACCCTGATGCCGGATATGACCCTTCCGCACTTCCAACTCTCAGAGACATAAGTTTCAGCAATGTCCGCGGCGAGGGAGTTCGTGTTCCGGTACAAATTCTAGGTAGCAAAGAGATTCCAGTTAGAAATGTAACTTTCCAAGATATGAATGTTGGGATAACATACAAAAAGAAACATATCTTTCAGTGCGCGTTTGTGGAAGGTCAGGTAATAGGGACCATTTTTCCGAAACCGTGTCGGAATTTCGATCAGTTCAACGAGCAAGGAGAGTTGGTTAAGCCCGCCGAGTCGCAGAATGTAACAGACATAGATTATGAAATCTGA 1431 0.4354 MVVFTSHKSTSFFFVFLCVAALGSVFLVWQKNVINGFLVLGGERVWESPKLRPVVFNLTDFGGVGDGVTVNTQAFERAVSVISKFGDKGGAQLNLNVPPGFWLTAPFNLTSHMTLFLAHDAVILGIQDEKYWPLMPALPSYGYGRERPGPRYSSLIHGQNLKDIVITGHNGTIDGQGQTWWTKHLHKLLNHTRGPLVQIMWSSDIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSKNILIRNLVVRSNVSAGISIGSEMSGGVSNVTIENILVWESRRAIRIKTAPGRGGYVRQITYRNLTFHNVRVGIVIKTNYNEHPDAGYDPSALPTLRDISFSNVRGEGVRVPVQILGSKEIPVRNVTFQDMNVGITYKKKHIFQCAFVEGQVIGTIFPKPCRNFDQFNEQGELVKPAESQNVTDIDYEI* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3161 476 Pfam Glycosyl hydrolases family 28 153 435 IPR000743 GO:0004650|GO:0005975
Psa1g3161 476 SUPERFAMILY Pectin lyase-like 45 449 IPR011050 -
Psa1g3161 476 PANTHER PECTIN LYASE-RELATED 9 474 - -
Psa1g3161 476 SMART pbh1 315 336 IPR006626 -
Psa1g3161 476 SMART pbh1 225 252 IPR006626 -
Psa1g3161 476 SMART pbh1 405 426 IPR006626 -
Psa1g3161 476 SMART pbh1 344 365 IPR006626 -
Psa1g3161 476 SMART pbh1 287 309 IPR006626 -
Psa1g3161 476 SMART pbh1 253 274 IPR006626 -
Psa1g3161 476 SMART pbh1 378 400 IPR006626 -
Psa1g3161 476 Gene3D - 43 439 IPR012334 -
Psa1g3161 476 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 9 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3161 Psa-Chr1 277778827 277782011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3161 3 476 Glycoside Hydrolase AT1G19170 71.811 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3161 - - gmx:100791187 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0440 4 26786629 26791084 Psa1g3161 1 277778827 277782011 PCT