Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g0349 ATGGAGAAATTAATTCAGACAAAATTCTTAACGTTTCTATTATTTCTTTGGGTTTGTTCTGTCCATGCCTCTGTGAGTTATGATAACAAAGCCATCCTTGTTAATGGACAGAGAAAATTTTTATTTTCTGGATCCATTCATTATCCAAGAAGCACACCAGAGATGTGGCCAGATCTTATTCAAAAAGCTAAAGATGGAGGTTTAGATGTTATACAATCTTATGTGTTTTGGAATGGGCATGAACCTTCTCCTGGCAAGTATTATTTTGAAGATAGGTATGATTTGGTTAAGTTCATCAAACTGGTGCAACAAGCTGGACTTTATTTTCATCTTCGTATTGGTCCCTATGCATGTGCTGAATGGAACTTAGGAGGATTTCCAGTTTGGCTTAAGTATGTTCCAGGAATTGAATTCAGAACAGATAATGAGCCTTTCAAGGCAGCAATGCAAAAATTTACCATTAAGATTGTTGACATGATGAAGGCGGAGAAATTGTTTCAAACGCAAGGAGGTCCGATCATTCTTTCTCAGATAGAGAACGAGTATGGACCAGTGGAATGGGAAATTGGCGCTCCTGGAAAAGCTTACACCAAATGGTTTTCTCAAATGGCTGTTGGTTTAAATACCGGCGTCCCGTGGATCATGTGCAAGCAAGAAGATGCTCCTGATCCTATTATTGATACTTGCAATGCTTACTATTGTGAAAACTTCAAGCCCAACAAGGACTATAAACCCAAAATGTGGACTGAGAATTGGAGTAGCTGGTACACAGAGTTTGGCGGCGGAGTTCCGCGTAGACCGGCGGAAGACATGGCTTTCTCTGTTGTAAGATTTGTGCAAAATGGTGGCACATTTGTTAACTACTATATGTATCATGGAGGAACTAACTTTGATCGAACATCTGGTGGGCCTTTTATTGCCACAAGCTATGACTTTGATGCTCCCATTGATGAATTTGGACTTTTGAACGAACCAAAATGGGGACATTTGAAATATTTGCATAAAGTAATTAAGCAATGTGAACCAGTTTTACTCTCGGCTGATTCTACAGTATATTGGCCTGGAAAAAACTTGGAGGTTCATGTTTTCAAGCCAAAAACTGGTGATTGTGTTGCTTTTCTTGGGAATTACGACACCAAATCTTCTGCAACAATTAAATTTGGAAATGGACAATATGACGTACCGCCTTGGTCTATTACCATTCTTCCTGACTGCAAAACTGCAGCTTTCAACACTGCAAAGGTTGGTATTCAATCCCCGATGAAGATGATTGCTACAAACACTCCATTTACTTGGCAGTCCTATAATGAAGAACCATCCTATTCCACTGTGAAAGATTCTTTCACAGCATATGCGTTATGGGAGCAAGTTAATGTCACACGAGATTTTACAGATTATTTGTGGTATATGACAGATGTGAACATTGATCAGAATGAAGGTTTTATAAAGAATGGAAAATCTCCTCTTCTTACAATAAATTCAGCAGGCCATGTTATGCATGTTTTTATTAACGGTCAACTTTCAGGTACTGAGTATGGATCATTGAAGTTTCCTAAATTGACATTTAGTAAGAATGTTAAACTAAATGCTGGAAATAACAAGATATCTTTGCTTAGTATTACTGTCGGTCTCCCGAATGTCGGCGTGCACTATGAAAAATGGAATGCTGGGGTGTTAGGCCCGGTCACACTCGGGGGTCTAAACGAAGGGAATAGAGACTTGTCTCGACAGAAATGGTCTTACAAGATTGGTCTCAAGGGTGAAGCCTTACAACTTTACACTCAAAGTGGAAGTAAATCAGTAAATTGGGTAGAAGGATCATCATTGGCTAAAGGACAACCTTTGACATGGTACAAGACAACTTTTAGTACACCAGCCGGAAATGATCCATTAGCTCTAGATATGAGTAGTATGGGAAAGGGTCAAGTATGGATAAACGGTCGGAACATCGGACGTCATTGGCCCGGATATAAAGCGCGTGAGGAATGTGGCGATTGTTATTATGCCGGAACTTATACAGAAACAAAATGTCGGACGAATTGCGGACAAGCCTCCCAAAAATGGTACCATGTTCCTAGGTCATGGTTGAGCTCAAGTGAGAACTATTTGGTTGTGTTTGAAGAATGGGGAGGTGACCCTGCTGGAATATCTTTGGTGAAAAGAACAGCCTAA 2172 0.3992 MEKLIQTKFLTFLLFLWVCSVHASVSYDNKAILVNGQRKFLFSGSIHYPRSTPEMWPDLIQKAKDGGLDVIQSYVFWNGHEPSPGKYYFEDRYDLVKFIKLVQQAGLYFHLRIGPYACAEWNLGGFPVWLKYVPGIEFRTDNEPFKAAMQKFTIKIVDMMKAEKLFQTQGGPIILSQIENEYGPVEWEIGAPGKAYTKWFSQMAVGLNTGVPWIMCKQEDAPDPIIDTCNAYYCENFKPNKDYKPKMWTENWSSWYTEFGGGVPRRPAEDMAFSVVRFVQNGGTFVNYYMYHGGTNFDRTSGGPFIATSYDFDAPIDEFGLLNEPKWGHLKYLHKVIKQCEPVLLSADSTVYWPGKNLEVHVFKPKTGDCVAFLGNYDTKSSATIKFGNGQYDVPPWSITILPDCKTAAFNTAKVGIQSPMKMIATNTPFTWQSYNEEPSYSTVKDSFTAYALWEQVNVTRDFTDYLWYMTDVNIDQNEGFIKNGKSPLLTINSAGHVMHVFINGQLSGTEYGSLKFPKLTFSKNVKLNAGNNKISLLSITVGLPNVGVHYEKWNAGVLGPVTLGGLNEGNRDLSRQKWSYKIGLKGEALQLYTQSGSKSVNWVEGSSLAKGQPLTWYKTTFSTPAGNDPLALDMSSMGKGQVWINGRNIGRHWPGYKAREECGDCYYAGTYTETKCRTNCGQASQKWYHVPRSWLSSSENYLVVFEEWGGDPAGISLVKRTA* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g0349 723 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Psa4g0349 723 SUPERFAMILY (Trans)glycosidases 24 341 IPR017853 -
Psa4g0349 723 Gene3D - 380 564 - -
Psa4g0349 723 SUPERFAMILY Galactose-binding domain-like 578 718 IPR008979 -
Psa4g0349 723 Pfam Glycosyl hydrolases family 35 32 335 IPR031330 -
Psa4g0349 723 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 PANTHER BETA-GALACTOSIDASE 9 722 - -
Psa4g0349 723 Gene3D Glycosidases 19 341 - -
Psa4g0349 723 PANTHER BETA-GALACTOSIDASE RELATED 9 722 IPR001944 GO:0004553|GO:0005975
Psa4g0349 723 Pfam Beta-sandwich domain in beta galactosidase 344 415 IPR041392 -
Psa4g0349 723 Gene3D - 580 723 - -
Psa4g0349 723 SUPERFAMILY Galactose-binding domain-like 400 568 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g0349 Psa-Chr4 21171681 21176435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g0349 12 721 Glycoside Hydrolase AT3G13750 69.425 0.0 1057
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g0349 - - gmx:100810170 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0349 4 21171681 21176435 Psa4g0349 4 21171681 21176435 ECH
Psa4g0349 4 21171681 21176435 Psa1g3208 1 282271696 282277622 PCT