LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g3208	ATGGAGAGAAAGTTTAACATGGTTTTGGTATTGTTGTTTTTGTGTTTGTGTTTGTGTGTTTGTTCTGTCACGGCCTCAGTGACTTATGATCACAAAGCTATTATAATTAATGGACAGAGAAGAATTTTGATCTCTGGTTCAATCCACTATCCAAGAAGCACACCTCAGATGTGGCCAGATTTAATTCAAAAGGCCAAAGATGGAGGTGTTGATGTGATTGAAACATATGTGTTTTGGAATGGACATGAACCTTCTCCAGGAAATTATTACTTTGAAGATAGGTTTGATTTGGTTAAGTTTGTCAAAGTGGTTCAACAAGCTGGACTGTATGTTCACTTGCGTATCGGTCCCTATGTTTGCGCAGAATGGAATTTCGGGGGATTTCCTGTTTGGCTAAAGTATGTACCAGGTGTTGCTTTCAGAACAGACAACGAGCCGTTCAAGGCAGCAATGCAAAAATTCACTGCTAAGATTGTCAGTATTATGAAAGGTGAGAGATTGTTTCAAAGCCAAGGTGGTCCAATAATTTTGTCTCAGATTGAGAATGAGTATGGACCAGTGGAATGGGAAATTGGTGGTCCTGGAAAAGCTTATACCAAATGGGCTGCTCAAATGGCTGTAGGTCTAGACACTGGTGTGCCGTGGATTATGTGCAAGCAAGAAGATGCTCCTGATCCTATTATTGATACCTGCAATGGATATTACTGTGAAAACTTTTCTCCCAACAAGAACTACAAACCCAAAATGTGGACTGAAAATTGGACTGGCTGGTACACTGATTTTGGTAGTGCTGTCCCTTATCGACCAGCAGAAGACTTGGCATTCTCAGTTGCCAGATTCGTACAGAATCGCGGCTCATATGTTAACTACTATATGTACCATGGAGGAACTAATTTTGGAAGGACAACTAGTGGCCTTTTCATTGCCACAAGCTACGACTACGACGCTCCTATCGATGAATACGGACTTATAAATGAACCAAAATGGGGGCATCTAAGAGATTTACATAAAGCGATAAAACAATGCGAGTCAGCTTTAGTGTCCGTGGATCCGACAGTGTCATGGCCTGGAAAAAACCTTGAGGTGCATCTTTACAAGACAAGCTTTGGTGCCTGTGCTGCATTCCTTGCAAATTACGACACCGCATCTTGGGCAAAAGTTGCCTTTGGAAATGGCCATTATGACCTACCACCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGAGGTTTTCAACACTGCAAAGGTTAGTGCTCCAAAGTTCCATAGAAAGATGACTCCAGTAAACGGCGCGTTTAATTGGCAGTCGTACAATGAACAACCTGCCGCCTCCGGTGGAGAAAGTTCGATCACAATAAATGCACTTTTGGAGCAGGTCAAAGTGACTCGTGATTCGTCAGATTATTTGTGGTACATGACAGATGTCAACATTAGTCCTAATGAAGGTTTCTTAAAGAATGGCCAATCTCCTGTTCTTACCGCAATGTCTGCCGGCCATGTTCTGCATGTTTTTGTTAATGGTCAACTTTCAGGAACTGCTTATGGAGGATTGGAGAATCCTAAATTAACATTTAGTAATAATGTGAAGCTATGGGTTGGCAATAACAAGATTTCTCTACTTAGTGTTGCTGTCGGTCTCTCGAATGTTGGCCTGCACTATGAAACATGGAACGTTGGAGTGTTAGGCCCGGTAACATTGAAGGGTCTAAATGAGGGGACAAGAGACTTATCTAAACAAAAATGGTCTTACAAGGTTTGTTATCGTATATATTCATTAGAAAATGCAGAATATGCACATTGTTGA	1806	0.4142	MERKFNMVLVLLFLCLCLCVCSVTASVTYDHKAIIINGQRRILISGSIHYPRSTPQMWPDLIQKAKDGGVDVIETYVFWNGHEPSPGNYYFEDRFDLVKFVKVVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGVAFRTDNEPFKAAMQKFTAKIVSIMKGERLFQSQGGPIILSQIENEYGPVEWEIGGPGKAYTKWAAQMAVGLDTGVPWIMCKQEDAPDPIIDTCNGYYCENFSPNKNYKPKMWTENWTGWYTDFGSAVPYRPAEDLAFSVARFVQNRGSYVNYYMYHGGTNFGRTTSGLFIATSYDYDAPIDEYGLINEPKWGHLRDLHKAIKQCESALVSVDPTVSWPGKNLEVHLYKTSFGACAAFLANYDTASWAKVAFGNGHYDLPPWSISILPDCKTEVFNTAKVSAPKFHRKMTPVNGAFNWQSYNEQPAASGGESSITINALLEQVKVTRDSSDYLWYMTDVNISPNEGFLKNGQSPVLTAMSAGHVLHVFVNGQLSGTAYGGLENPKLTFSNNVKLWVGNNKISLLSVAVGLSNVGLHYETWNVGVLGPVTLKGLNEGTRDLSKQKWSYKVCYRIYSLENAEYAHC*	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g3208	601	PRINTS	Glycosyl hydrolase family 35 signature	37	54	IPR001944	GO:0004553\|GO:0005975
	Psa1g3208	601	PRINTS	Glycosyl hydrolase family 35 signature	58	76	IPR001944	GO:0004553\|GO:0005975
	Psa1g3208	601	PRINTS	Glycosyl hydrolase family 35 signature	113	132	IPR001944	GO:0004553\|GO:0005975
	Psa1g3208	601	PRINTS	Glycosyl hydrolase family 35 signature	170	185	IPR001944	GO:0004553\|GO:0005975
	Psa1g3208	601	PRINTS	Glycosyl hydrolase family 35 signature	249	264	IPR001944	GO:0004553\|GO:0005975
	Psa1g3208	601	PRINTS	Glycosyl hydrolase family 35 signature	286	301	IPR001944	GO:0004553\|GO:0005975
	Psa1g3208	601	PRINTS	Glycosyl hydrolase family 35 signature	306	322	IPR001944	GO:0004553\|GO:0005975
	Psa1g3208	601	Gene3D	Glycosidases	20	342	-	-
	Psa1g3208	601	PANTHER	BETA-GALACTOSIDASE RELATED	11	593	IPR001944	GO:0004553\|GO:0005975
	Psa1g3208	601	PANTHER	BETA-GALACTOSIDASE	11	593	-	-
	Psa1g3208	601	SUPERFAMILY	(Trans)glycosidases	26	343	IPR017853	-
	Psa1g3208	601	SUPERFAMILY	Galactose-binding domain-like	401	571	IPR008979	-
	Psa1g3208	601	ProSitePatterns	Glycosyl hydrolases family 35 putative active site.	172	184	IPR019801	GO:0004553\|GO:0005975
	Psa1g3208	601	Pfam	Beta-sandwich domain in beta galactosidase	346	417	IPR041392	-
	Psa1g3208	601	Pfam	Glycosyl hydrolases family 35	34	338	IPR031330	-
	Psa1g3208	601	Gene3D	-	444	581	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g3208	Psa-Chr1	282271696	282277622	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g3208	1	586	Glycoside Hydrolase	AT3G13750	69.898	0.0	882

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g3208	-		-	gmx:100810170	1026.93

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa1g3208	1	282271696	282277622	Psa1g3208	1	282271696	282277622	ECH
	Psa4g0349	4	21171681	21176435	Psa1g3208	1	282271696	282277622	PCT