Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g4002 ATGGTTGTTATGGACAAGGTAAGTCAATATGAACGTGTGTTCAACCGCTTTGATGAAAATGGAGACGGCAAGATATCACCGGCTGAGCTGCGGCAGTGCGTGGAAGCCATCGGCGGCGAGAAGCTATCGGCTGCGGATGCGGAGGTGGCGGTGGCAAATTTGGATTCGGGTGGTGATGGACTATTGGGATTTGATGATTTTGTGAAGTTTTTGGATGGAGTAAAAGAGGAAGATAAGGTGAATGATTTAAAAGAGGCTTTTAAGCTGTATGATCCGGATGGAAGTGGTTGTATAACTCCTAGGAGTCTTGAGAAAATGCTTAGTAAGTTAGGTGATTCTAGAAGTTTAGATGAATGTCAACTTATGATTTCTAAGTTTGATCTAGATGGGGATGGGAAAATCAGTTTTGAGGAGTTTAAGGTCATGATGTTGTAA 435 0.4276 MVVMDKVSQYERVFNRFDENGDGKISPAELRQCVEAIGGEKLSAADAEVAVANLDSGGDGLLGFDDFVKFLDGVKEEDKVNDLKEAFKLYDPDGSGCITPRSLEKMLSKLGDSRSLDECQLMISKFDLDGDGKISFEEFKVMML* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g4002 144 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Psa3g4002 144 CDD EFh 82 143 IPR002048 GO:0005509
Psa3g4002 144 ProSiteProfiles EF-hand calcium-binding domain profile. 114 144 IPR002048 GO:0005509
Psa3g4002 144 SMART efh_1 46 74 IPR002048 GO:0005509
Psa3g4002 144 SMART efh_1 82 110 IPR002048 GO:0005509
Psa3g4002 144 SMART efh_1 118 144 IPR002048 GO:0005509
Psa3g4002 144 SMART efh_1 9 37 IPR002048 GO:0005509
Psa3g4002 144 Pfam EF-hand domain pair 81 143 IPR002048 GO:0005509
Psa3g4002 144 Pfam EF-hand domain pair 10 70 IPR002048 GO:0005509
Psa3g4002 144 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 144 - -
Psa3g4002 144 SUPERFAMILY EF-hand 7 144 IPR011992 -
Psa3g4002 144 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Psa3g4002 144 Gene3D - 77 144 - -
Psa3g4002 144 Gene3D - 1 76 - -
Psa3g4002 144 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 144 - -
Psa3g4002 144 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Psa3g4002 144 ProSitePatterns EF-hand calcium-binding domain. 18 30 IPR018247 -
Psa3g4002 144 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g4002 Psa-Chr3 371689564 371690836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g4002 5 143 EF-hand Containing Proteins AT1G76650 48.921 2.14e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g4002 K13448 - gmx:100783575 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g4002 3 371689564 371690836 Psa3g4002 3 371689564 371690836 ECH
Psa1g1948 1 140449723 140450612 Psa3g4002 3 371689564 371690836 ECH
Psa3g4002 3 371689564 371690836 Psa1g1948 1 140449723 140450612 PCT