Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1948 ATGGTCATGGACAAAGTGACTCAATATTTACGTGTGTTCAACCACTTTGATGAAAATGGAGATGGAAAGATATCACCGTCGGAGTTACGGGAACGCGTGGAGGCGATCGGAGGCAAGATGTCCAGCGATGAGGCAGAAGTGGCGGTTGAGCTTCTCGACTCGGACGGGGATGGATTGGTAGGGTTGGATGATTTTGTGAGATTTGTAGAGGGAGGAAAGGAGGAAGAGAAAGTGAAGGATTTAAGAGAGGCTTTTAAGATGTATGAAATGGAAGGGTGTGGTTTTATTACACCAAAGAGTTTGAAGAGAATGCTTGGAATATTGGGTGAGTGTAGGAGTGTAGATGATTGTAAAGTTATGATTGCTAAATTTGACATTGATGGAGATGGAATGCTTAGTTTTGATGAATTTAGGGTAATGATGCTTTAA 429 0.4219 MVMDKVTQYLRVFNHFDENGDGKISPSELRERVEAIGGKMSSDEAEVAVELLDSDGDGLVGLDDFVRFVEGGKEEEKVKDLREAFKMYEMEGCGFITPKSLKRMLGILGECRSVDDCKVMIAKFDIDGDGMLSFDEFRVMML* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1948 142 SUPERFAMILY EF-hand 7 142 IPR011992 -
Psa1g1948 142 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Psa1g1948 142 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 142 - -
Psa1g1948 142 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Psa1g1948 142 Pfam EF-hand domain pair 94 141 IPR002048 GO:0005509
Psa1g1948 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 142 - -
Psa1g1948 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Psa1g1948 142 Pfam EF-hand domain pair 10 69 IPR002048 GO:0005509
Psa1g1948 142 Gene3D - 71 142 - -
Psa1g1948 142 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Psa1g1948 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Psa1g1948 142 CDD EFh 11 69 IPR002048 GO:0005509
Psa1g1948 142 CDD EFh 80 141 IPR002048 GO:0005509
Psa1g1948 142 Gene3D - 3 70 - -
Psa1g1948 142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Psa1g1948 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Psa1g1948 142 SMART efh_1 44 72 IPR002048 GO:0005509
Psa1g1948 142 SMART efh_1 80 108 IPR002048 GO:0005509
Psa1g1948 142 SMART efh_1 116 142 IPR002048 GO:0005509
Psa1g1948 142 SMART efh_1 8 36 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1948 Psa-Chr1 140449723 140450612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1948 4 141 EF-hand Containing Proteins AT1G76650 47.826 5.93e-40 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1948 K13448 - zju:107427847 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1948 1 140449723 140450612 Psa1g1948 1 140449723 140450612 ECH
Psa1g1948 1 140449723 140450612 Psa3g4002 3 371689564 371690836 ECH
Psa3g4002 3 371689564 371690836 Psa1g1948 1 140449723 140450612 PCT