Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2572 ATGGAAGAAGCAAAGCTAAGGTGTGCTGTTGTTACTGGGTCAAACAAAGGGATAGGTTTTGAGACGGTTAAAATATTGGCCTCAAATGGAATCAAGGTGGTGCTAACAGCTAGAGATGAGAAAAAAGGAAATGAAGCCATTGAAAAATTGAAAGAGTTTGGTCTCTCTGACAATGCTATGTTTCACCAACTTGACGTCACTGACCCTACTAGTATTACTTCACTAGTAGACTTTGTTAAGACTCACTTTGGAAGACTTGATATCTTGGTGAACAATGCAGGAGTTAGTGGTGTCAATCCCTATGAAACGGTGGGATCAACAGTTGATTGGGAGCAATTGACTCAAACTTATGAGATGGTTCAAAAGTGCTTAAGAACAAACTACTATGGTGTCAAGGAAACAACAGAGGCATTTCTACCCCTTCTCAACTTATCCAATTCTCCCAAAATTGTTAATGTTTCTTCTCAAGCAGGATTATTAAAGAATATACAAAACCAATGGGCTCAGAAGGTGTTTAATGATGTTGAGAATCTTACAGAAGAAGGAATAGATGAGGTACTAAGAGAGTTTGTCAAAGACTTCAAAGAAGATTCATTAGAAAACAAAGGGTGGCCAACCTTTTTGTCTGCATATATTGTCTCAAAAGCAGCCATGAATTCCTACACAAGGATTTTGGCTAAGAAGAATCCAAACTTGTGCAGCAATTGTGTGTGTCCTGGTTTTGTGAAGACAGACATCAATAGAAACACTGGCATGTTATCTGTTGACCAAGGGGCTGCTAGTGTTGTCAGATTAGCACTGCTTCCTCATGGTTCTCCTTCTGGCCTCTTCTATATTAGGGAACAAATGTCAAATTTTTGA 861 0.3891 MEEAKLRCAVVTGSNKGIGFETVKILASNGIKVVLTARDEKKGNEAIEKLKEFGLSDNAMFHQLDVTDPTSITSLVDFVKTHFGRLDILVNNAGVSGVNPYETVGSTVDWEQLTQTYEMVQKCLRTNYYGVKETTEAFLPLLNLSNSPKIVNVSSQAGLLKNIQNQWAQKVFNDVENLTEEGIDEVLREFVKDFKEDSLENKGWPTFLSAYIVSKAAMNSYTRILAKKNPNLCSNCVCPGFVKTDINRNTGMLSVDQGAASVVRLALLPHGSPSGLFYIREQMSNF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2572 286 Gene3D - 2 286 - -
Psa3g2572 286 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 271 IPR036291 -
Psa3g2572 286 Pfam short chain dehydrogenase 8 163 IPR002347 -
Psa3g2572 286 CDD carb_red_PTCR-like_SDR_c 7 286 IPR045313 GO:0016616
Psa3g2572 286 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 286 - -
Psa3g2572 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Psa3g2572 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Psa3g2572 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Psa3g2572 286 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 4 286 - -
Psa3g2572 286 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Psa3g2572 286 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Psa3g2572 286 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Psa3g2572 286 PRINTS Glucose/ribitol dehydrogenase family signature 211 230 IPR002347 -
Psa3g2572 286 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2572 Psa-Chr3 216352746 216354422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2572 10 251 Acyl Lipid Metabolism Gene Families AT1G24360 22.449 8.20e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2572 K15095 - gmx:100778451 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2572 3 216352746 216354422 Psa3g2572 3 216352746 216354422 ECH
Psa4g3547 4 299163561 299169317 Psa3g2572 3 216352746 216354422 PCT