Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2516 ATGGAGAAATCATTCAACTCTGGTGAAAATTCTGATGCTGATTATCATCCTTCGCGGTTGAGTGGTGATTCTTTCGGATACTGCCGCGTTTGGACAAGCTCGGAGGCATCAAACTCAAATTTCTCTGACTGTGTAGATGATAGCAGCTATGCCAGTGAACCTTCTCCTTTTCCTTCGCCTTCGCCTTCTCGGTGGAGGGATGTTAAACCTGGTCTCTCTAGGCTAGGAATGAAGTTGCGCAAGCCTTCGGTCGATAACAAACTTGATGACAATGATCTTTTGGATTCAGGTGAGGTTGAAATGATGAAGGAAAGATTCGCGAAGCTTCTGCTAGGAGAAGACATGTCTGGTGGAGGAAAAGGTGTTAGCACAGCAGTTACAATCTCAAATGCCATTACCAATCTCTATGCAACGGTATTCGGACAGAGTTTAAAGTTGGAGCCGCTGAATCCCGAGAAGAAAGCCATGTGGAAAAGAGAAATGAAAGTTCTTTTATCAGTGTGTGATTACATACAAGAATTCGCCCCAACTGCACAATATTTAGAAGATGGCACAATTGTGGAGATGATGAAAAGCAGACCGAGGTCAGATATCTATATAAACCTCCCGGCACTGCAGAAGCTTGACACAATGCTTATAGAAATATTGGAATCTTTTGAGGATACTGAGTTCTGGTATGCAGAGAATATATCAGCAACTTCACCTCGTTTGCGCGCAGCATCGTTTCGAAAGATTGTTCCAAGGAAAGACGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCTCCCCGGCGGCCTCTCTGAGAAGTCGAGGAAGCATCTAACAGAGAAAAGGGACTGTGCTAATCAAATTCACAAAGCCGCAATGGCGATAAATAGCAATATTCTCGCAGAAATAGATATTCCAGAAACATACATAGACGATCTTCCAAAGCTGAAATTCTATTGCCAAGTGATTGATGATTCCTTTAAATGTGACCCTATAAGGCAACTGTCTTGGAATTTATCAACAAATTTGATAAGCTTTTTATGGAAGCCAATAATAGCAGCCGAGTCTTGTAGAAATCGGGACGATATAATTTCGTATAAGAGTGGAAGAGGGAGTCTAGGGGACACAATATACAACTATATGTATACGGCAGACATGTTCTCACCTGATCGCCTTCTTGACGGTCTGAAAATAAGCTCTGAACATGAAGCACTTGATCTAGCAGACAGGGTTGAATCCTCGATGTATACATGGAGGCGTAAAGCTTGTCTTAGCCATTCAAAGTCGTCATGGAAAGAAGTAAAAGATCTCATGGATGAAACAGATTTGGAAGACAAAAACTATAGTTTAGCTGATAGAGCAGAAGCTTTGTTGTTTTGCCTCAAGCAAAGATATCCTGAACTTTCCCAAACTTCTTTGGATACATGCAAGATCCAATACAATAAGGATGTGGGAAAAGCGGTTCTAGAAAGCTATTCAAGAGTTTTAGAAGGTCTAGCATTCAACATTGTTGCTTGGATTGAAGATGTTCTTTATGTAGATAAGACTATGACGAATCGAGAAGTCTAG 1554 0.4151 MEKSFNSGENSDADYHPSRLSGDSFGYCRVWTSSEASNSNFSDCVDDSSYASEPSPFPSPSPSRWRDVKPGLSRLGMKLRKPSVDNKLDDNDLLDSGEVEMMKERFAKLLLGEDMSGGGKGVSTAVTISNAITNLYATVFGQSLKLEPLNPEKKAMWKREMKVLLSVCDYIQEFAPTAQYLEDGTIVEMMKSRPRSDIYINLPALQKLDTMLIEILESFEDTEFWYAENISATSPRLRAASFRKIVPRKDEKWWLPVPCVLPGGLSEKSRKHLTEKRDCANQIHKAAMAINSNILAEIDIPETYIDDLPKLKFYCQVIDDSFKCDPIRQLSWNLSTNLISFLWKPIIAAESCRNRDDIISYKSGRGSLGDTIYNYMYTADMFSPDRLLDGLKISSEHEALDLADRVESSMYTWRRKACLSHSKSSWKEVKDLMDETDLEDKNYSLADRAEALLFCLKQRYPELSQTSLDTCKIQYNKDVGKAVLESYSRVLEGLAFNIVAWIEDVLYVDKTMTNREV* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2516 517 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 98 311 IPR005512 GO:0005085
Psa3g2516 517 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 362 513 IPR005512 GO:0005085
Psa3g2516 517 Gene3D PRONE domain, subdomain 1 92 329 - -
Psa3g2516 517 Gene3D PRONE domain, subdomain 1 476 510 - -
Psa3g2516 517 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 1 517 - -
Psa3g2516 517 MobiDBLite consensus disorder prediction 45 66 - -
Psa3g2516 517 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 517 IPR038937 GO:0005085
Psa3g2516 517 Gene3D PRONE domain, subdomain 2 362 475 - -
Psa3g2516 517 ProSiteProfiles PRONE domain profile. 89 517 IPR005512 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2516 Psa-Chr3 213198452 213201980 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2516 - - gmx:100806086 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2516 3 213198452 213201980 Psa3g2516 3 213198452 213201980 ECH
Psa3g2516 3 213198452 213201980 Psa4g3594 4 302674577 302677403 PCT