Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1543 ATGAGTTTCTTCAAATCAGTTTTCTCCGACGACCCTAACCCTTCCGGTTCCCAAGAATCCAACAATGCTCCCCACAGCGAGTCGCCAAACGCGCCGGTCAGTCCTTCCGCCGCGTGGAATTTCGGAAGCCTAATCAAAACCCTCAGCGAAAAATCAGAAACCGTCATCGAAGTTTACCGTCGCGATCTTCATGAATTCGGCACAGGTTTGAAGAAAGAGATAGAGGTCGCTCACGGCTCTCTCGAAACGGTGGGACACGTCATCGACCGATTCGGAAACACAGTGATTAAAGGAACGACTCAGATTATATCTCAAGGCAAAGACGCAATCCTCGATTCCGATTCCGATTCCGATTCAGACAACAGCAATAACAATAAGAATAAGAAACAGAGTAGTGTCAATTCGAAACTGTATAATAGATTTGATTCTCAGGTTCGTGCAATTCAGGGTGATCCTAAGACTTTCACGGCAGAACCGTTGGATTTGGAGCGTTATAATAAGTGGAAATTGGATTTTTCGTTGGAAGGGAAAAATGAAGAAATGGAAGGGTTTCTAAAAGAGAATGAGGCCATGGACAGTGTGTATAAAATGGTGGTTCCTAATGTTGTTGATAGTGAAACTTTTTGGTTAAGGTATTATTATAAGCTTTATAAGGTTAAGAAAGCGGAGGATGTTAGGGCCGGGCTTGTGAGACGAATGGCGAGGGTAGACGAAGAAGAGTTGAGTTGGGATGTTGAAGATGATAAGTATGATGACAACGAAGAAGATGATGATGATGATGATGATGATGATGATAGTGAGAAGAGTGCTAGAGAGGGTGGTAATTTTGATGGTAACGGTGTTGTGGGAATTAAGAGATTGGATGATTCTAATGAGGAAGAGACTAAGGTTGAAAAGAGAAACAGTTTATCAGAAAACAAGATGAAGGAGGAATCAAAAGTTGATGACAATTTGGAGGTTGTTCAAGAGAAGGGTAATGGAAGACAAGTGGATGATGGTAAGGATTCTGTAGTTGATTCAGATAAGAGAATGACAGTGGAGAGTAATGTTGGTGATAAAAAGTCATTACCGGTTGTAAGTCGGGACAAGGAGCATGAGGAAGTGGAGGAGAAAGATCTTGAGTGGGATGAGATTGAGGAGCTTGGTAGATTTGATGAAAAGAAGGCAATGGGGAATGGTAGTCCAAGTAAAATTGATATTCGGAAGCGTCTGAGTTCGGCTGCGGAAGAAGAAGACTTGAGTTGGGATATTGAAGATGATGATGATGAGCTTACCAAGGCTTGA 1284 0.4237 MSFFKSVFSDDPNPSGSQESNNAPHSESPNAPVSPSAAWNFGSLIKTLSEKSETVIEVYRRDLHEFGTGLKKEIEVAHGSLETVGHVIDRFGNTVIKGTTQIISQGKDAILDSDSDSDSDNSNNNKNKKQSSVNSKLYNRFDSQVRAIQGDPKTFTAEPLDLERYNKWKLDFSLEGKNEEMEGFLKENEAMDSVYKMVVPNVVDSETFWLRYYYKLYKVKKAEDVRAGLVRRMARVDEEELSWDVEDDKYDDNEEDDDDDDDDDDSEKSAREGGNFDGNGVVGIKRLDDSNEEETKVEKRNSLSENKMKEESKVDDNLEVVQEKGNGRQVDDGKDSVVDSDKRMTVESNVGDKKSLPVVSRDKEHEEVEEKDLEWDEIEELGRFDEKKAMGNGSPSKIDIRKRLSSAAEEEDLSWDIEDDDDELTKA* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1543 427 MobiDBLite consensus disorder prediction 244 267 - -
Psa3g1543 427 SUPERFAMILY BSD domain-like 137 225 IPR035925 -
Psa3g1543 427 SMART wurzfinal6 168 220 IPR005607 -
Psa3g1543 427 MobiDBLite consensus disorder prediction 244 372 - -
Psa3g1543 427 Coils Coil 219 239 - -
Psa3g1543 427 PANTHER PROTEIN, PUTATIVE-RELATED 1 76 - -
Psa3g1543 427 PANTHER PROTEIN, PUTATIVE-RELATED 76 421 - -
Psa3g1543 427 MobiDBLite consensus disorder prediction 286 349 - -
Psa3g1543 427 MobiDBLite consensus disorder prediction 386 427 - -
Psa3g1543 427 PANTHER SYNAPSE-ASSOCIATED PROTEIN 76 421 - -
Psa3g1543 427 PANTHER SYNAPSE-ASSOCIATED PROTEIN 1 76 - -
Psa3g1543 427 MobiDBLite consensus disorder prediction 113 133 - -
Psa3g1543 427 ProSiteProfiles BSD domain profile. 168 220 IPR005607 -
Psa3g1543 427 Gene3D BSD domain 129 229 IPR035925 -
Psa3g1543 427 Pfam BSD domain 168 224 IPR005607 -
Psa3g1543 427 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1543 Psa-Chr3 139628449 139629732 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1543 - - mtr:MTR_7g094240 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1543 3 139628449 139629732 Psa3g1543 3 139628449 139629732 ECH
Psa3g1543 3 139628449 139629732 Psa6g3891 6 339246343 339248752 PCT