Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1542 ATGGCGGCTATCCAAGAATCCCGGGCGGACCAACCGAAAACGGTGCCGGTGCCGTCTCAATTGCCACCGCCGTTGTTAGTCTCCGACGCGTTCGCCAAGGACGCCATTCTCGCATGGTATCGCGGCGAGTTTGCTGCCGCTAACGCAATCATCGACGCTCTCTGCGGTCATCTCGCGCAGGTTGCTTCGTCCTCCAACGATTACGACTCGGCCTTTGCCGCTATACATCACAGGCGTCTCAATTGGATCCCTGTCCTCCAGATGCAGAAGTATCACTCCATAGCTGATGTCACTCTCGAACTGCGTAATGTTGCTGAGAAGAAAATCGAATCGGTTGATGCAAAGACGAAAACCGTGGAGAGTGGTGATGTAGATGAGGAAATGAACATCGGAAATGATGGCGATGAAGCTCCGGCGGAGTATGATTCGCCGGACAGTGAGATCACTGATTCAGGATTGCTGGAAGTGCAACACAGTTTTATCAACAATAGTATATGTTCAAATCATGAAGAATGTGAAGGACGTCCTTCAGAGATAAAGTTGACACAAGGTTTCACAACGAAGGAATTCGTGAAGGGGCATCCGGTGAATGCTGTGAAAGGATTGAGGTTGTATGAGGATGTTTTTTCTGATTCACAACTCTCCAAGCTGACTGATTTTGTGAAAGAGATTCATGCGGCTGCTCAGAACGGAGAACTTTCAGGTGAAACCTTTATACTATTTAACAAACAGGTGAAGGGGAACAAGAGGGAGTTGATTCAGTTAGGTGTACCCATATTTGGACAGATAAAAGACAATGCCAAAAGCAAAATTGAGCCAATTCCATCACTTCTTCATGGTGTCATTGATCACCTTGTTCAGTGGCAATTAATTCCAGAGTACACAAGGCCAAATGGTTGCATTATCAACTTCTTTGAAGAGGGGGAGTTTTCTCAGCCATTCTTGAAACCACCGCATTTGGATCAGCCTCTATCTACCCTTCTTCTCGCTGAGTCTACCATGGCTTTTGGGCGTATTCTTATGAGTGAAAATGATGGGAATTACAAAGGTCCACTCATGCTATCTTTGAAGCAAGGGTCACTTTTAGTGATGAGAGGAAACAGCGCTGACATGGCAAGGCATGTGATGTGTCCATCGCCTAACAAAAGGGTGAGTATCACCTTCTTTAGAGTGAGAGAAGGCTCTTATCAAGGCCAATCAACAAACCCTCATCCAATGACGACAACCACGATGACAGTTTGGCAACCTGGTACTGCCAGTCCACTTGCTTTGCCAAATGGGCCGATAAGTGGCCACGAGGCTATGGGTATGATACCCAAATGGGGTATGATTGGTCCTCCAATGTTCATGCTAGCCCCTATGAACCCTATGACAATGAATCCCAGCAAACTTCCTCGAGGCGGGACTGGAGTTTTCTTGCCTTGGAAGGGGCATCCCAGGAAACATTCAAGGTATCTTCCACCACGTGCCCATAAAGGACGGGTAGCATTACCTTCCCCTGTTGAATCACACAGGGAAGGCTCTACTTCTGAACCCACCATCGCTGTTGAAGGATAG 1557 0.4746 MAAIQESRADQPKTVPVPSQLPPPLLVSDAFAKDAILAWYRGEFAAANAIIDALCGHLAQVASSSNDYDSAFAAIHHRRLNWIPVLQMQKYHSIADVTLELRNVAEKKIESVDAKTKTVESGDVDEEMNIGNDGDEAPAEYDSPDSEITDSGLLEVQHSFINNSICSNHEECEGRPSEIKLTQGFTTKEFVKGHPVNAVKGLRLYEDVFSDSQLSKLTDFVKEIHAAAQNGELSGETFILFNKQVKGNKRELIQLGVPIFGQIKDNAKSKIEPIPSLLHGVIDHLVQWQLIPEYTRPNGCIINFFEEGEFSQPFLKPPHLDQPLSTLLLAESTMAFGRILMSENDGNYKGPLMLSLKQGSLLVMRGNSADMARHVMCPSPNKRVSITFFRVREGSYQGQSTNPHPMTTTTMTVWQPGTASPLALPNGPISGHEAMGMIPKWGMIGPPMFMLAPMNPMTMNPSKLPRGGTGVFLPWKGHPRKHSRYLPPRAHKGRVALPSPVESHREGSTSEPTIAVEG* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1542 518 Gene3D - 185 396 IPR037151 -
Psa3g1542 518 MobiDBLite consensus disorder prediction 126 143 - -
Psa3g1542 518 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 13 516 IPR044842 GO:0003729|GO:0006402|GO:0032451
Psa3g1542 518 SUPERFAMILY Clavaminate synthase-like 190 391 - -
Psa3g1542 518 MobiDBLite consensus disorder prediction 126 146 - -
Psa3g1542 518 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 13 516 - -
Psa3g1542 518 MobiDBLite consensus disorder prediction 494 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1542 Psa-Chr3 139623046 139630417 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1542 K10767 - gmx:100776159 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1542 3 139623046 139630417 Psa3g1542 3 139623046 139630417 ECH
Psa3g1542 3 139623046 139630417 Psa6g3892 6 339248982 339254821 PCT