Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0877 ATGGCATCAAGTAAAGAATTCAAGGAAGACAGAGCCGAAGCAGCTGCAAAGCTAGCAGCAAAAGACATCGGCGATGTAAACAGAACAAATGAAAGAGAACATGGTTACGATCTTCGGTCTGAAGCACAGTTCAAACAAGCACGAGCTGAAGCAGCTGCGAAACTCGCTGCTAAGGATCTTGAAGATGTTAACCGAGCAAGAGAGAGTGGATTCAATGCACAAGAGAAGAAACCAGGTGTCATTGGTTCAATGTTTAAAGCAGCGAAAGAAGCTGTCATTGGTAAGAGTAATGAACCTCATGAAAAAGTGAGGGAAACTTCAGATTATGGTGCAGAGAAAGCGAGGGATGTGAGAGATACTACTTCGAACAAAGCCGGAGTGTATGCTGATTATGCTGCAGAGAAAGCGAGAGAAGCGAAGGATGCTACTAATAAAGCAGGTGCATATGCTGATAATGCTGCAGAGAAAGCAAGAGGAGCGAAAGATGCTACAAATAAAGCAGGACAGTATGCTGATAGTGCTGCAGAGAATGTAAGGGGAGCCAAAGATGCTACCGATAAAGCTGGGCATTATGCTGCTACTGCTGCAGAGAGAGCAAAAGGAGCGCAAGATGTTACAAATAAAGTAAGTGAGTATGCTGCTAATGCTGCAGAGAAGGCAAGAGGAGCTAAAGATGTTACTAATAAAGCAGGTGAGTATGCTGAATATGCTGCAGAGAAAGCTAGGGAAGCGAAAGCATGGGAGGAGAAACAAAACTATGCTGCAGAGAAAGCCAGGGAAAACGAACAGAAGTATGCTGCAGAGAAAGCTAGGGAAGCGAAAGCACGGGAGGACATAAACCATGCTGCAGAGAAGGCGAGAGAAGCTAAAGATGCTGCAGCTAATAAAGCGGGAGAGTATAGGGATTATACAGCGGAGAAGGCTAAAGAAGGGAAAGATGCTACAGTCGGGAAGCTTGGGGAGTTGAAGGATTCTGCTGCTGATGCTGCTAAAAGAGCAATGGGTTTCTTTACTGGAAAGAAAGATGAAACTAAGGAAATACTGCGTGGCAGTGAGGAAGATGCGAGGATGAGAATGGACGATTTAACGATTGCAGGAGGAGGGAGGGGCAGAGAGAGAGTGGTGGTGGAGGTGGATGAGAGTCGTCCGGGAGTGGTGGCGGATGGGTTGAGGGAAGCGGCGGAAGTGAGGACAGCGGTGACGGGAGTAAGTCAGAGTGGTCAGGGACGTTTGGAGGAAGAAGGCACAGTTCATGTTGAGCGTCGTCGTGAGAAAATATGA 1281 0.4692 MASSKEFKEDRAEAAAKLAAKDIGDVNRTNEREHGYDLRSEAQFKQARAEAAAKLAAKDLEDVNRARESGFNAQEKKPGVIGSMFKAAKEAVIGKSNEPHEKVRETSDYGAEKARDVRDTTSNKAGVYADYAAEKAREAKDATNKAGAYADNAAEKARGAKDATNKAGQYADSAAENVRGAKDATDKAGHYAATAAERAKGAQDVTNKVSEYAANAAEKARGAKDVTNKAGEYAEYAAEKAREAKAWEEKQNYAAEKARENEQKYAAEKAREAKAREDINHAAEKAREAKDAAANKAGEYRDYTAEKAKEGKDATVGKLGELKDSAADAAKRAMGFFTGKKDETKEILRGSEEDARMRMDDLTIAGGGRGRERVVVEVDESRPGVVADGLREAAEVRTAVTGVSQSGQGRLEEEGTVHVERRREKI* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0877 426 MobiDBLite consensus disorder prediction 400 426 - -
Psa3g0877 426 PANTHER DAUER UP-REGULATED-RELATED 40 260 - -
Psa3g0877 426 PANTHER DAUER UP-REGULATED-RELATED 1 34 - -
Psa3g0877 426 PANTHER DAUER UP-REGULATED-RELATED 228 406 - -
Psa3g0877 426 Coils Coil 272 296 - -
Psa3g0877 426 Pfam Late embryogenesis abundant protein 281 322 IPR004238 -
Psa3g0877 426 Pfam Late embryogenesis abundant protein 108 147 IPR004238 -
Psa3g0877 426 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 228 406 - -
Psa3g0877 426 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 1 34 - -
Psa3g0877 426 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 40 260 - -
Psa3g0877 426 MobiDBLite consensus disorder prediction 93 117 - -
Psa3g0877 426 Gene3D - 276 338 - -
Psa3g0877 426 MobiDBLite consensus disorder prediction 92 117 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0877 - - mtr:MTR_7g103280 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0877 3 82393726 82395289 Psa3g0877 3 82393726 82395289 ECH
Psa3g0877 3 82393726 82395289 Psa6g1777 6 103276443 103277908 PCT