Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0623 ATGTATGCAGAAATGGAGGAGCATAAACAATCTAGTATCGCCAAGTTTGAGAAATTCACTTGGAAGGTTGAGAACTTCTCTTGCTTGGAAGGTGAGGAGGTTTGCTCTGATCCTTTCATCCTCTGCGGCTATCAATGGAGGATAAGTCTGTTCCCAAGAGGGAATAAGCTCAACAAAGTAGATGACGACTTATCAATTTATTTGGAGGCTTTACAAACTTCCAATATGTCTAAGGGATGGAACCGAGATGTCATATTTAGGCTAACTGTATTCAATCAACTCAATACCAGCATGACTGTTACAAAAGAATCTAGCAATGAGTTCAATGCATGTGAGGATTCATTGGGGTTCCAATCCTTCATGACTTTTGCTGAGCTTCATTATCTTAAGAAAGGGTTTATTGTGAATGATGCTTGTATTATTGGTGCTGAGGTTTATGTTTCTAATTCAATACATGAGAAACCAATAAATCAAACAGCTAACTTAACTTCTTCCCTAGCATTTGGAAGTCTATCTGGGTTTACAGAAGTTGATGTTCCAACTCCAAAGCAAGAAAAAGGCCAAAGCCAAAATCTAAGTGAGCTTATGGATTTCAAGGGTTTAGGACAAATAGAAAAAGACTTTGTTCCATTACTAGAGGAAGTATGTTGTCAGCATCCTTCACTTATTTTGTGTCAGCAGAAAAGAAGCCGCACGTGTAGGGAATGGGCGTTCACTGCTTTGGGGAGAGTTCTTTATTTTCTAAAGACCAGAAAGGTGAAAGATATGAACGACTTAGCTTGTAAGGAGCTTCAAATTTTCTGGGAGGAACTTGAGCTATTTAGTTTTGATTTGACATGGCTAGAGCCTCATGTTCAATCAGCCTTAGGTATGAAAAGTTATTTGGAGAAATTGGAGGAGGCAGAAAAGTTGAAGGTTAATGTGGATGCTCTAGAGTTGGAAATGGAGATGCTTAAGTCAAAGATAGCTAGTGTAGAGGAAAATCTTGATGCTGCAAGAGACTTGTTGAAAGCAAAAGATCTTGAAGAGATAGATTTAGAAGCTGGGTTAGGATTTGTGAAGCCATAA 1068 0.3858 MYAEMEEHKQSSIAKFEKFTWKVENFSCLEGEEVCSDPFILCGYQWRISLFPRGNKLNKVDDDLSIYLEALQTSNMSKGWNRDVIFRLTVFNQLNTSMTVTKESSNEFNACEDSLGFQSFMTFAELHYLKKGFIVNDACIIGAEVYVSNSIHEKPINQTANLTSSLAFGSLSGFTEVDVPTPKQEKGQSQNLSELMDFKGLGQIEKDFVPLLEEVCCQHPSLILCQQKRSRTCREWAFTALGRVLYFLKTRKVKDMNDLACKELQIFWEELELFSFDLTWLEPHVQSALGMKSYLEKLEEAEKLKVNVDALELEMEMLKSKIASVEENLDAARDLLKAKDLEEIDLEAGLGFVKP* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0623 355 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 16 338 - -
Psa3g0623 355 SUPERFAMILY TRAF domain-like 18 152 - -
Psa3g0623 355 CDD MATH 18 145 IPR002083 GO:0005515
Psa3g0623 355 SMART math_3 18 126 IPR002083 GO:0005515
Psa3g0623 355 Coils Coil 291 342 - -
Psa3g0623 355 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 16 338 - -
Psa3g0623 355 Pfam MATH domain 23 146 IPR002083 GO:0005515
Psa3g0623 355 ProSiteProfiles MATH/TRAF domain profile. 16 145 IPR002083 GO:0005515
Psa3g0623 355 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 2 152 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0623 Psa-Chr3 55651433 55652776 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0623 - - cam:101489930 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2814 6 228559061 228561047 Psa3g0623 3 55651433 55652776 PCT