Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4239 ATGAGACTGATGTCAACATACAAACAAAGAAAGATGAGAAATCCACGTGTCTCGTCTCACCGGTTACTTTACTCCTCTATAAATATCCATTCACCAATCATCCAATTCTCGCCAAAACAATTAAAACAAAATCACATAACTTTCATTTTCAAAAACCCGTATCACACAACAATGGCTTCGCGCGTCGCCATCACTAATAAATCTTCTCCTACTTATTTAAACTCTTCACGTTTTCTATCTCCTTCTCAGTTTTCCAATTCCTCTTTCCAACCTCAAAACGCTGCTTCCAACATGTTCAACAAATCGGTTCTTGTTACCGGTGGAGCCGGTTACATCGGTACCCACACCGTTCTTCAGCTTTTGCTCGGCGGTTTTAAAACCGTCGTTGTTGATAATCTTGATAATTCGTCCGAAGTTGCAATCCATAGAGTCAAAGAACTCGCTGCTCAATTTGGGAATAACCTCAACTTTCATAAGGTGGATCTCCGGGATAGGGCTGCACTAGAGCAAATTTTTGCTTCCACAAAGTTTGATGCAGTCATACATTTTGCTGGAATGAAAGCAGTAGGTGAAAGTGTGCAGAAACCGTTACTCTACTACAACAACAACTTGATTGGGACAATCACTCTATTGGAAGTCATGGCTGCTCATGGATGCAAAAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCTCTGTCAGCAGCGAACCCATATGGACGAACCAAGCTTACCATAGAAGAAATCTGCCGTGATGTCCAACGTGCTGATCCAGATTGGAAAATAATGTTATTGAGATACTTCAACCCAGTTGGTGCACACCCTAGTGGTTATATTGGGGAGGATCCTCGTGGAATTCCCAACAACCTCATGCCATTTATTCAGCAAGTAGCCGTTGGCAGACGGCCTGCACTGACAGTGTTTGGAAATGATTATAATACAGTTGATGGAACTGGGGTTCGGGATTACATTCACGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGCTTAAACTTGAAGAACCTGATATAGGTTGTGAGGTTTATAACTTGGGGACTGGAAAGGGAACATCCGTTTTGGAGATGGTTAAAGCTTTTGAACAGGCATCTGGAAAGAAAATTCCACTTGTGAAGGCTGGCCGAAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAGCAAAAGCTGAAAGAGAACTTAAGTGGAAGGCAAAATATGGAATAGATGAAATGTGCCGTGATCAATGGAACTGGGCCAGCAAAAACCCTTACGGCTATGGATCTCCAGATTCCACGGATTAA 1341 0.4258 MRLMSTYKQRKMRNPRVSSHRLLYSSINIHSPIIQFSPKQLKQNHITFIFKNPYHTTMASRVAITNKSSPTYLNSSRFLSPSQFSNSSFQPQNAASNMFNKSVLVTGGAGYIGTHTVLQLLLGGFKTVVVDNLDNSSEVAIHRVKELAAQFGNNLNFHKVDLRDRAALEQIFASTKFDAVIHFAGMKAVGESVQKPLLYYNNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLTIEEICRDVQRADPDWKIMLLRYFNPVGAHPSGYIGEDPRGIPNNLMPFIQQVAVGRRPALTVFGNDYNTVDGTGVRDYIHVVDLADGHIAALLKLEEPDIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIPLVKAGRRPGDAEIVYASTAKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGSPDSTD* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4239 446 CDD UDP_G4E_1_SDR_e 103 431 IPR005886 GO:0003978|GO:0006012
Psa2g4239 446 Gene3D - 291 432 - -
Psa2g4239 446 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 98 438 IPR036291 -
Psa2g4239 446 Pfam GDP-mannose 4,6 dehydratase 104 427 IPR016040 -
Psa2g4239 446 TIGRFAM galE: UDP-glucose 4-epimerase GalE 103 437 IPR005886 GO:0003978|GO:0006012
Psa2g4239 446 PANTHER UDP-GLUCOSE 4-EPIMERASE 98 443 - -
Psa2g4239 446 Gene3D - 103 372 - -
Psa2g4239 446 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 98 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4239 Psa-Chr2 423994965 423998803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g4239 102 416 Miscellaneous Gene Families AT4G00110 27.545 6.70e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4239 K01784 - gmx:100818509 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4239 2 423994965 423998803 Psa2g4239 2 423994965 423998803 ECH
Psa2g4239 2 423994965 423998803 Psa7g0577 7 38393153 38397105 PCT