Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g4161 ATGGTCAATCGCCGATTCACTCAGGTAGCCACCAGCGACGAAGATGAAGACGAAGCACCACCGCCACCTCAGCAACATTCCAAGCTACGCAAACGGAAGAGAATGAAGCTTCTAGACGAAGAAGAAGAAGACAACGACAATAGCGATAACGATGAGGAGAAGGAAGAGGAGAAAAAGGATCCGCCTCAGACTCCAGATGATGCTAAACCAATTGGTGATCCTCTTAGGGTTTCGGGGAAAGGAAGAGGGAGAAAGAGACATTACGAATCCTTCGAATTCGATGGCAACCAATACTATCTCGAGGATCCTGTTCTTCTTGTGCCTGAGGATAAAGAACAAAAGCCCTATGTTGCTATAGTTAAAGACATTATACAGTACTTTAGTGGAAGTATAATGGTGGCAGGACAGTGGTTTTATCGTCCTGAAGAAGCTGAAAAAAAAGGCGGTGGCAGCTGGAAATCGTGTGATACAAGGGAGCTTTTTTATAGTTTCCACCGGGATGAGGTTCCTGCAGAGTCTGTTATGCACAAGTGTGTGGTGCACTTTGTTCCCTTAAACAAACAGTTTCCCAAACGTAAGCAACATCCTGGCTTTATTGTACAAAAGGTGTATGACACTTTGGAAAGGAAACTCTGGAAGCTTACTGATAAGGACTTTGAAGATGTTAAACAGCAAGAAATCGACGAGCTTGTTCAGAAAACTCAGAAACGCATCGGCGAGTTACTTGACATTGAGCCTGAAGAATCCCCTCCTGTTGATCAGGAGGAGGTGATGAAAAATAAAAGAAGCTTAAGGAGAAAGAGCATTTCACCCATTGATGTTTCAAGGGAGGAGGAAGGAATTCCTAAGAGTGACCAACATTCGAAGCCCGAAACACCCATGAGTTGTGTAAATAATAACTCAGAGCATCATCGCATATTAGTGAATTTCAATGCACTAACTGGAAACGTTCATCGTGACAAATGGTTGGAGAGGCTGCTTCAGCACATTCAGTACATGTGTAATTATGACGAGGGTGTAGAAAAGGGAAAGGGATCAGGAAATGCCGATTCTGACGAAATCAAAATAAAAAACAATGATAAAACATCAGAAATAGCAAATGACTGTCAGGACAAGGGTCAGAAGAGTTCCGAGTCTTTTGTGTGGCCAGATGCTGCTGTTTCAGCCATAGTTGCTCTTGAGAAAGCTTCCAATGAGGCCCTTCCAACAGATTTTCAGAAGTACAACCAAAAGCTACGGCAATTGGATTTTAATCTCAAGAACAATGCATTGCTAGCACGCCGTCTGCTAAATGGAGAGTTGGAACCTTCTAAAATTTTGAATATGACACCCATTGAATTAAAGGAGGGTTTGACTGCTGAGGAATTAACCAAGAAGGAGCCTGATGAGAAACAACACATGCAAATGACGGATGCCCGCTGCTCAAGATGCATGGAGTTTAAGGTGGGCTTGAGGGAGATTATCCATGCTGGACACGATGACCGTTATCAGCTGGAATGCTCTGCCTGTGGTAATTCCTGGTATGCCTCCCGGGATGAAGTGTCTACACTGACCATAGATGCATCGGACTCAAAGAGAAGCACAGGCACAGCACCATCGGCCACAGCAAAATTTGAAGATGTTCAGAAGAAGCTGGCAAGCCCCCGTGAATCTGAAAACACAGCTGATGATATCTCTAAGAAAACAGGTGAACCTCATGTGCCTGTTTTGGACACCCAGAAATCATTTGGCAAGTCCAGGAAAGATGACAATATCGAGGGCAAAAAACATGTTGATAAGGAATGA 1785 0.4387 MVNRRFTQVATSDEDEDEAPPPPQQHSKLRKRKRMKLLDEEEEDNDNSDNDEEKEEEKKDPPQTPDDAKPIGDPLRVSGKGRGRKRHYESFEFDGNQYYLEDPVLLVPEDKEQKPYVAIVKDIIQYFSGSIMVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQFPKRKQHPGFIVQKVYDTLERKLWKLTDKDFEDVKQQEIDELVQKTQKRIGELLDIEPEESPPVDQEEVMKNKRSLRRKSISPIDVSREEEGIPKSDQHSKPETPMSCVNNNSEHHRILVNFNALTGNVHRDKWLERLLQHIQYMCNYDEGVEKGKGSGNADSDEIKIKNNDKTSEIANDCQDKGQKSSESFVWPDAAVSAIVALEKASNEALPTDFQKYNQKLRQLDFNLKNNALLARRLLNGELEPSKILNMTPIELKEGLTAEELTKKEPDEKQHMQMTDARCSRCMEFKVGLREIIHAGHDDRYQLECSACGNSWYASRDEVSTLTIDASDSKRSTGTAPSATAKFEDVQKKLASPRESENTADDISKKTGEPHVPVLDTQKSFGKSRKDDNIEGKKHVDKE* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g4161 594 CDD BAH_plant_3 78 224 - -
Psa2g4161 594 ProSiteProfiles TFIIS central domain profile. 365 475 IPR003618 GO:0006351
Psa2g4161 594 ProSiteProfiles BAH domain profile. 96 215 IPR001025 GO:0003682
Psa2g4161 594 Gene3D - 343 449 IPR036575 GO:0006351
Psa2g4161 594 Pfam Transcription factor S-II (TFIIS), central domain 314 465 IPR003618 GO:0006351
Psa2g4161 594 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 588 - -
Psa2g4161 594 MobiDBLite consensus disorder prediction 343 377 - -
Psa2g4161 594 MobiDBLite consensus disorder prediction 52 66 - -
Psa2g4161 594 Pfam BAH domain 97 213 IPR001025 GO:0003682
Psa2g4161 594 Gene3D - 13 200 IPR043151 -
Psa2g4161 594 MobiDBLite consensus disorder prediction 521 594 - -
Psa2g4161 594 MobiDBLite consensus disorder prediction 1 83 - -
Psa2g4161 594 MobiDBLite consensus disorder prediction 542 564 - -
Psa2g4161 594 MobiDBLite consensus disorder prediction 252 286 - -
Psa2g4161 594 MobiDBLite consensus disorder prediction 521 535 - -
Psa2g4161 594 SUPERFAMILY Elongation factor TFIIS domain 2 313 448 IPR036575 GO:0006351
Psa2g4161 594 SMART mid_6 352 457 IPR003618 GO:0006351
Psa2g4161 594 MobiDBLite consensus disorder prediction 343 368 - -
Psa2g4161 594 SMART BAH_4 96 215 IPR001025 GO:0003682
Psa2g4161 594 MobiDBLite consensus disorder prediction 246 293 - -
Psa2g4161 594 Coils Coil 38 58 - -
Psa2g4161 594 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 588 - -
Psa2g4161 594 MobiDBLite consensus disorder prediction 575 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g4161 Psa-Chr2 421631766 421635861 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g4161 - - cam:101495294 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g4161 2 421631766 421635861 Psa2g4161 2 421631766 421635861 ECH
Psa2g4161 2 421631766 421635861 Psa7g0760 7 56087784 56092508 PCT