LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g3535	ATGGGTTCTGTTGGAGGAGATGAGGTAATTCAAGAGGCTGTACAGAATTATGAAGAGAGAATTCAAGTTTCGGTTCGAATTCGGCCGTTAAATGATAAGGAAAAAGCGAGGAATGATGTTTCTGATTGGGAATGTATCAATGATAGTACAATCATTTACAGGAATAATGTTTCAGCTTCTGAAAGATCTCTATATCCAACAGCATATTCATTTGATAGAGTGTTTAGATCAGATTGTGACACAAGGAAGGTGTATGAAGAAGCGGCTAAAGATGTTGCTCTTTCTGTTGTTGGTGGAATCAATTCGAGCATTTTTGCGTATGGACAAACCAGCAGTGGAAAAACTTATACCATGAGTGGTATAACTGAATGCACTGTAGCAGACATTTTTAACTATGTAGAAAAGCACATGGAGAGAGAATTCATTTTGAAGTTTTCGGCAATTGAGATTTATAATGAATCTGTTAGGGATCTTCTTAGTCCAGATTGTACTCCTCTTAGACTTCTTGATGATCCAGAGCGAGGAACAGTTGTTGAGAAACTTACTGAGGAAACTATTAGGGATTGGGAACATTTTACAGAACTCATTTCTTTTTGTGAAACTCAAAGGCAGATAGGAGAGACATCATTGAACGAAGCAAGCTCTAGATCTCATCAGATTCTCAGACTGACCGTTGAAAGTTCGGCGCGCGAGTTTCTCGGAAATGACAAGTTTAGCTCTCTTTCAGCATCAGTGAATTTTGTTGATCTTGCTGGAAGTGAAAGGGCATCTCAGACCAATTCAGCTGGGGCAAGGTTGAAAGAAGGTTGCCACATAAATCGTAGTTTACTAACTCTAGGAACTGTTATCCGCAAACTCAGTAAGGGAAGAAATGGGCATATTCCTTTCAGAGATTCAAAGCTAACGCGCATATTGCAATCGTCATTAGGAGGCAATGCTAGAACTGCAATCATTTGCACCATGAGCCCTGCACGGAGCCATGTCGAACAAAGCAGAAACACTCTCTTATTTGCAAGTTGTGCTAAGGACGTCGAAACTAATGCGAAAGTCAATGTGGTGGTGTCTGACAAAGCACTGGTCAAGCAATTACAAAAGGAGTTGGCTAAACTGGAAAGTGAATTGAGAAGTTCAGGATCGGCTCGCCCTAATAATTCTGATTCTTCAGCATTATTGAGAGAGAAAGATCATGAAATTGAGATGTTAAGGATAGAGGTAAAGGAGCTAACCTTGCAACGCGACCTTGCACAAGTTCAAATTAAGGACATTCTCCAAGAAGCGGGAGATAACATGTCTTCTTTAATAGGAGTGGAAGCTTTAGGTCCTCGGTATCCCGATTTGCGTATTCGAAACACATGGAATTTAGAAAATCTAAAAGAGGAACCGAATGTATTAAGTATCAACTGTGAAGAAAGTGTTAGGTCCTTTGATGCTTCACAATATTCAGATGGACATAGTATTAGTTCTGATGATAATTTGTTCCAACTCCCCGACCTTGAAAAGAATTTTATGGTAAAAAATTCTTCCCCTAGGCTATCAGTTACAAGCATTAATAATGCTGTACAGAATGATTTGGATCAGAAGAACATTGAAGATCAGCATGAAGAGAATTATTGTAAAGAAGTTAGGTGCATTGAGTTAGAAGAGCCTATCACAAACACGCATACACATACAAACTCAGAAGATTTAAGATCAAATACATATACCAATTCTAGTGCATCATCTCCTCGTGCAAAGACAGATACGTTAGAATCGATTGTAGTTAATAATGACGACAAAAACAATAAGGATTTGTTTTCATCAGGGTTAAAGGAAGACAATAAACTGAACAACTTGCATGAACATTTTGTTCTTCCAACTCCAGACAATAGAACTCCTTGCATAACAGAAGACAAAAGAAAAAGTAGTTCTGGATCGTTGAAGTTTAGCCGAAGTAGAACTTGTAAAGCTAGTCTCATGAGGAGTTTACCTTCTGATTGGTTTGAAGATGGTGATGTAATTCAGAACACACCTCCTCCAGTAGGGGATGAAAAATACTTTTTTGGAAGACCGGGTGGGTTTCTGAGGAACGTTCATACACTGAGTTATGACTTAAATGCTGAGAGAAATTTTGCGAAATGTTCCGTTGATGATGATGATACACAGAATGCGAAATCCTTCAATGAAAAGGAACGTGAGATCAATGATCCTTTAACTCCAAATAAAGAGGAAATGGAACATCTTAAAAGGTTGAATTTACTGGATCACCGTGAGGTTCCTGGGACAGGATTGGATGCCATTATGTCTGCAAAAAATGTCAAAGATATTGGTTTGGACCCAATGCAAGCCGATGGAGAAAGTCATTCAGATTGGCCTTCAAAATTTAACAGGCTACAAAAGGAGATTATAGAACTTTGGGACGCTTGTAATGTTTCATTGGTTCACAGAACTTACTTTTTCCTTCTCTTCAAAGGGGATCCATTAGATTCTATTTATTTGGAGGTAGAGCACAGAAGACTATCATATCTTAAGCAAACTTTTTCACTAGGCAAAGAAACTCTTGAAGATGGAAGAACCCTTGCCCCTGAGTCAAGCACGAGATATCTAAGAAGAGAGAGACAGATGTTATGCAAGCAAATGCAGAGAAAGCTATCTAAAGGTGATAGAGAGAATTTATACTTGAAATGGGAGATTCGTTTGAGTTCAAAGCATAGGAGGTTACAGTTGGCCCATTGTCTATGGACTGACACAAACAGCATGGATCACATTAGAGAAAGTGCAACTGTTGTTGTAAAGCTGGTTGGTCCAGTAGAGCCAGAACAAGCTCTTAAGGAAATGTTTGGGCTCAATTTTGCTCCAAGGCCAACTAGTAGGAAATCTTTTAGTTGGTCTTTTACAAACAGTATGAGGCAGATTTTGTGA	2898	0.3885	MGSVGGDEVIQEAVQNYEERIQVSVRIRPLNDKEKARNDVSDWECINDSTIIYRNNVSASERSLYPTAYSFDRVFRSDCDTRKVYEEAAKDVALSVVGGINSSIFAYGQTSSGKTYTMSGITECTVADIFNYVEKHMEREFILKFSAIEIYNESVRDLLSPDCTPLRLLDDPERGTVVEKLTEETIRDWEHFTELISFCETQRQIGETSLNEASSRSHQILRLTVESSAREFLGNDKFSSLSASVNFVDLAGSERASQTNSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPARSHVEQSRNTLLFASCAKDVETNAKVNVVVSDKALVKQLQKELAKLESELRSSGSARPNNSDSSALLREKDHEIEMLRIEVKELTLQRDLAQVQIKDILQEAGDNMSSLIGVEALGPRYPDLRIRNTWNLENLKEEPNVLSINCEESVRSFDASQYSDGHSISSDDNLFQLPDLEKNFMVKNSSPRLSVTSINNAVQNDLDQKNIEDQHEENYCKEVRCIELEEPITNTHTHTNSEDLRSNTYTNSSASSPRAKTDTLESIVVNNDDKNNKDLFSSGLKEDNKLNNLHEHFVLPTPDNRTPCITEDKRKSSSGSLKFSRSRTCKASLMRSLPSDWFEDGDVIQNTPPPVGDEKYFFGRPGGFLRNVHTLSYDLNAERNFAKCSVDDDDTQNAKSFNEKEREINDPLTPNKEEMEHLKRLNLLDHREVPGTGLDAIMSAKNVKDIGLDPMQADGESHSDWPSKFNRLQKEIIELWDACNVSLVHRTYFFLLFKGDPLDSIYLEVEHRRLSYLKQTFSLGKETLEDGRTLAPESSTRYLRRERQMLCKQMQRKLSKGDRENLYLKWEIRLSSKHRRLQLAHCLWTDTNSMDHIRESATVVVKLVGPVEPEQALKEMFGLNFAPRPTSRKSFSWSFTNSMRQIL*	966

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa2g3535	965	PRINTS	Kinesin heavy chain signature	99	120	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa2g3535	965	PRINTS	Kinesin heavy chain signature	208	225	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa2g3535	965	PRINTS	Kinesin heavy chain signature	244	262	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa2g3535	965	PRINTS	Kinesin heavy chain signature	294	315	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa2g3535	965	PANTHER	ATP-BINDING MICROTUBULE MOTOR FAMILY PROTEIN	12	965	-	-
	Psa2g3535	965	ProSitePatterns	Kinesin motor domain signature.	243	254	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Psa2g3535	965	Coils	Coil	353	380	-	-
	Psa2g3535	965	ProSiteProfiles	Kinesin motor domain profile.	20	344	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa2g3535	965	PANTHER	CENTROMERE PROTEIN E	12	965	-	-
	Psa2g3535	965	SMART	kinesin_4	18	352	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa2g3535	965	CDD	KISc_CENP_E	21	344	-	-
	Psa2g3535	965	Pfam	Kinesin motor domain	26	344	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa2g3535	965	Gene3D	Kinesin motor domain	11	375	IPR036961	-
	Psa2g3535	965	Coils	Coil	391	425	-	-
	Psa2g3535	965	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	20	376	IPR027417	-
	Psa2g3535	965	MobiDBLite	consensus disorder prediction	552	579	-	-
	Psa2g3535	965	MobiDBLite	consensus disorder prediction	372	391	-	-
	Psa2g3535	965	Pfam	Domain of unknown function (DUF3490)	786	945	IPR021881	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa2g3535	Psa-Chr2	386414749	386420881	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa2g3535	18	374	Miscellaneous Gene Families	AT5G06670	43.562	1.55e-83	283

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g3535	K11498		-	gmx:100809766	1370.91

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa5g0089	5	4824462	4835920	Psa2g3535	2	386414749	386420881	ECH
	Psa2g3535	2	386414749	386420881	Psa2g3535	2	386414749	386420881	ECH