Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3012 ATGCCGAGTCTAAGAACTTGTCCATCTCTTTCCCTCCCATTCTCACCAACCAAACAACCAAAAAACCTCTCTCCATCATCATTCAAACCCTACCACCAATCTCCACCGTCCAAATCCCGATCTTCAATCAAAACCTCTTCATCTTCCACACCTCACTCCCAAGGGATAGAACATATCGTTCTCTTAAAAGTCAAAGAAAACACAGAATCCTCAAAAGTGAACGCGATGATCAACGAGATGCAATCGTTAGTCACACTTGAACAAGTTCGTCACCTTACTCTAGGACCAATCCTAACCAACAATGAAACCATTTCAACAACAATACCTATTTCAGATCTTCGTTACACTCACTTGTTCCATAGTCGTTATGATTCAGAGGAGGATCTTCAAACATATAACGACCACTCTAAGCATATTAATGCGGTAAGAGGCTTTATTTTCCCTATCTGCGACGACCTTTTGGTCGTCGATTGGATAGCGGGAGAGGTTGCTCTTCCGCCACATCCTTCGCCCGGTACTGCTTTTCGTGTGAGTTTCTTGAAACTCAAGGAAGAGAAGGAGAATGACGGTGAAGTTAAGGACGAGGTTTTTCGGGCAATCCGAGGTATTAAGGAGAGTGTTGGACTTGGAGGAGTTAGTTATGTGTCTTATGGTGAAAATATATCTCCGGCGAGGGCGAAGGGGTTCTCGATAGCGTCGCTAGTGGTTTTTCCGGGACGGGAGGAGTTGGACAGTGTGGATGCTGGTGAGGGTTTGGTGAAGGTTAAGGAGCATTTGGAAAGTGTGGTGGTGGTTGATTATGTGGTTCCTTTGAAGTAG 819 0.4493 MPSLRTCPSLSLPFSPTKQPKNLSPSSFKPYHQSPPSKSRSSIKTSSSSTPHSQGIEHIVLLKVKENTESSKVNAMINEMQSLVTLEQVRHLTLGPILTNNETISTTIPISDLRYTHLFHSRYDSEEDLQTYNDHSKHINAVRGFIFPICDDLLVVDWIAGEVALPPHPSPGTAFRVSFLKLKEEKENDGEVKDEVFRAIRGIKESVGLGGVSYVSYGENISPARAKGFSIASLVVFPGREELDSVDAGEGLVKVKEHLESVVVVDYVVPLK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3012 272 ProSiteProfiles Stress-response A/B barrel domain profile. 56 158 IPR013097 -
Psa1g3012 272 Pfam Stress responsive A/B Barrel Domain 56 159 IPR013097 -
Psa1g3012 272 MobiDBLite consensus disorder prediction 1 52 - -
Psa1g3012 272 SMART Dabb_2 174 269 IPR013097 -
Psa1g3012 272 SMART Dabb_2 56 160 IPR013097 -
Psa1g3012 272 Gene3D - 171 269 - -
Psa1g3012 272 PANTHER - 39 270 IPR044662 -
Psa1g3012 272 ProSiteProfiles Stress-response A/B barrel domain profile. 174 272 IPR013097 -
Psa1g3012 272 SUPERFAMILY Dimeric alpha+beta barrel 53 162 IPR011008 -
Psa1g3012 272 Gene3D - 52 160 - -
Psa1g3012 272 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN UP3 39 270 - -
Psa1g3012 272 SUPERFAMILY Dimeric alpha+beta barrel 175 269 IPR011008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3012 Psa-Chr1 264111951 264113576 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3012 - - lja:Lj6g3v1201360.1 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3012 1 264111951 264113576 Psa1g3012 1 264111951 264113576 ECH
Psa4g0404 4 24970807 24972326 Psa1g3012 1 264111951 264113576 PCT