Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1721 ATGAAGGCAACAGTAAGGTACTTGGCAGGAATCGCTGGCCCTAGCGGTTTTGGCTCTAATTCCACCGCTGAACAAGTTACTCAACACTGTTCTCCAATTCTTTCTTCCCATCTCACCGTTCTCATTACTGGGGCGACTTCTGGAATTGGAGCTGAAACGGCGAGAGTGCTGGCGAAGAGAGGAGTGAGAGTAGTGATTGGTGCGAGGAACATGAAGAAGGCAAGCGAAGTGAGAGAGAATATCCTGAAAGAGAGTCCACATGCTGAGGTTATATTGCTGGAGATTGATCTCAGCTCTTTCGCTTCCGTCCAGAGATTTTGTTCCGAGTTCTTGGCTCTAGATCTTCCGCTTAACATTCTTATAAACAACGCAGGGATATACTCTCAGAACTTGGAGTTCTCCGAAGAGAAAATTGAGATGACATTTGCAACAAATTACCTAGGTCATTTCTTGTTGACGGAAATGCTACTGGAGAGAATGATAGAAACAGCAGAGAAGACTGGCATTGAAGGAAGAATAGTAAACGTGTCTTCAATGATTCATAGTTGGGTTAAAAGAGATGCCTTTCAATTCAAGGACATGATTAACGGAAGAAACTATAATGGCACGCGTGCGTACGCCCAGTCAAAACTGTCCAGCATTTTGCATGCCAAGGAAATAGCCAAACAGCTAAAGGCAAGAAATGCAAGAGTAACTATCAATGTGGTCCATCCGGGCATTGTGAAGACTGCAATTATGAGAGCTCACAAGAGTCTGATAACAGATTCCTTGTTTTTCATCGCATCCAAGTTGCTCAAATCGACTTCTCAGGGAGCAGCAACGACATGTTATGTTGCTCTGAGCCCACACACAGAAGGGGTGAGTGGGAAATACTTCTTAGACTGCAATGAAAGTAGCTGTTCTAGTTTAGCCAATGACGAATCTGAAGCTCTAAAGCTATGGAACAACACACGTTCCCTCCTTCACAAACGATTATTACGTCAAGCTGCAGTTTAG 996 0.4408 MKATVRYLAGIAGPSGFGSNSTAEQVTQHCSPILSSHLTVLITGATSGIGAETARVLAKRGVRVVIGARNMKKASEVRENILKESPHAEVILLEIDLSSFASVQRFCSEFLALDLPLNILINNAGIYSQNLEFSEEKIEMTFATNYLGHFLLTEMLLERMIETAEKTGIEGRIVNVSSMIHSWVKRDAFQFKDMINGRNYNGTRAYAQSKLSSILHAKEIAKQLKARNARVTINVVHPGIVKTAIMRAHKSLITDSLFFIASKLLKSTSQGAATTCYVALSPHTEGVSGKYFLDCNESSCSSLANDESEALKLWNNTRSLLHKRLLRQAAV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1721 331 CDD retinol-DH_like_SDR_c_like 39 314 - -
Prci9g1721 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Prci9g1721 331 Pfam short chain dehydrogenase 39 180 IPR002347 -
Prci9g1721 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Prci9g1721 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Prci9g1721 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Prci9g1721 331 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Prci9g1721 331 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Prci9g1721 331 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Prci9g1721 331 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Prci9g1721 331 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Prci9g1721 331 PANTHER RETINOL DEHYDROGENASE 14 320 - -
Prci9g1721 331 Gene3D - 35 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1721 Prci-Chr9 29274839 29277971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1721 19 248 Acyl Lipid Metabolism Gene Families AT1G63380 28.992 1.09e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1721 - K11153 pcin:129309518 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2822 4 40284494 40287975 Prci9g1721 9 29274839 29277971 CCT
Prci9g1721 9 29274839 29277971 Prci9g1721 9 29274839 29277971 ECH