Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2822 ATGTATAAATATATATCTCGTTGTGTGGCTTTGAGTTTGAATTCTGAAATGCTCTTTCTTTGTGGTAGTAAGAGAGTGAAAGCAGGCAAAGGCATGAAGGCCACACTGAGATACTTAGCAGGAATGGCAGGGCCCAGTGGTTATGGCTCAAATTCAACAGCCGAGCAAGTCACTGAAGATTGCTCTTTCTTTCTCTCTTCTCATCTAACTGCTCTCATCACAGGTGGGACTTCTGGGATTGGAGCTGAAACAGCAAGAGTGTTGGCGAAGAGAGGAGTGAGGGTAGTGATTGGTGCGAGGGACTTGAAGAAGGCGAGAGAAGTGAGACAGAACATCTTGAAAGAAAGTCCAAACGCTGAGGTTATAGTGTTGGAAATTGATCTCAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCTGAGTTTTTGGCTCTACAGCTTCCCCTCAATATCCTCATAAACAATGCTGGAATATTCTCTCAGAACTTGGAGTTCTCTGAAGAGAAAATTGAGATGACATTTGCCACCAATTTCTTGGGACATTTTTTGGTGACAGAAATGTTGCTAGAAAAAATGATAGAAACGGCAGAGGAGAGTGGAATTGAAGGAAGGATCATAAATGTGTCTTCTGTGATCCATAGCTGGGTGAAGAGAGATGCTTTTCGCTTCCACCAAATGCTCGATGGAACAAATTACAATGGGACACGTGCATATTCTCAATCCAAATTGGCCAATATTTTGCATGCCAAGGAATTGGCCAGACAACTTAAGGCGAGGAATGCAAGAGTAACGGTCAATGCAGTTCATCCGGGGATTGTTAAGACAGGAATTATCAGAGCTCATAAAGGCCTAATAACAGATTCCCTGTTCTTCATTGCGTCCAAGTTGCTCAAATCAACATCTCAGGGCGCGGCAACAACGTGTTACGTGGCAGTGAGTCCACAAACGCAAGGGCTGAGTGGGAAATACTTCGCAGATTGCAATGAGAGCAGCTGCTCAAGTGTAGCAAATGACGAATTAGAAGCTCAGAAGCTGTGGAACAACACTCGAGCCTTGCTTCATAAACGACTACGTCAAGCCGGTTCTTGA 1086 0.4392 MYKYISRCVALSLNSEMLFLCGSKRVKAGKGMKATLRYLAGMAGPSGYGSNSTAEQVTEDCSFFLSSHLTALITGGTSGIGAETARVLAKRGVRVVIGARDLKKAREVRQNILKESPNAEVIVLEIDLSSFASVQRFCSEFLALQLPLNILINNAGIFSQNLEFSEEKIEMTFATNFLGHFLVTEMLLEKMIETAEESGIEGRIINVSSVIHSWVKRDAFRFHQMLDGTNYNGTRAYSQSKLANILHAKELARQLKARNARVTVNAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSTSQGAATTCYVAVSPQTQGLSGKYFADCNESSCSSVANDELEAQKLWNNTRALLHKRLRQAGS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2822 361 PANTHER RETINOL DEHYDROGENASE 45 351 - -
Prci4g2822 361 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 237 256 IPR002347 -
Prci4g2822 361 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 157 IPR002347 -
Prci4g2822 361 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 210 IPR002347 -
Prci4g2822 361 CDD retinol-DH_like_SDR_c_like 70 345 - -
Prci4g2822 361 Gene3D - 65 357 - -
Prci4g2822 361 PRINTS Glucose/ribitol dehydrogenase family signature 237 256 IPR002347 -
Prci4g2822 361 PRINTS Glucose/ribitol dehydrogenase family signature 146 157 IPR002347 -
Prci4g2822 361 PRINTS Glucose/ribitol dehydrogenase family signature 260 277 IPR002347 -
Prci4g2822 361 PRINTS Glucose/ribitol dehydrogenase family signature 70 87 IPR002347 -
Prci4g2822 361 PRINTS Glucose/ribitol dehydrogenase family signature 196 212 IPR002347 -
Prci4g2822 361 Pfam short chain dehydrogenase 70 211 IPR002347 -
Prci4g2822 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 70 329 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2822 Prci-Chr4 40284494 40287975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2822 48 325 Acyl Lipid Metabolism Gene Families AT3G46170 25.172 2.00e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2822 - - pcin:129309518 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2822 4 40284494 40287975 Prci9g1721 9 29274839 29277971 CCT
Prci4g2822 4 40284494 40287975 Prci4g2822 4 40284494 40287975 ECH