Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1666 ATGCCGGGAATCCTTACAAATGGATTTGAACATAATGAAAGAGCAAATGAGATGAACGGGAATCCTTCTCCTTGTAAGGAAACCGCCACTCCAATCAAGCCCGAAGGGAGTTCCTTTAGTCAACAAAGTCCTCAGAATTCAGGTCCAAATGTACCTGTTCTACCAGTTGACACCTCAATTGAGCAGCTTTATGAAAATGTCTGTGACATGGAAAGTTCTGATCACTCACCCTCCAGACAAAGTCTCGGATCTGATGGCAATGAGTCTAGGATCGATTCAGAATTGTGCCATCTAGTTGGAGGGACGATGAGGGAAGTGGAAATAATTGAAGAGGAGGTGGCTGAGAGGTCGAGAGGTGATTCTTTCAGTGAAACATCTTCTAGAAAAGGAACATCAGAAGACGGTGAACAGTTGGTAGAGGCAGATGAGAGGATTCAATGTGAGAAGTTGGTACAGGAGGATGAGAAGATTCAATGTGAGGAGTTGGTACAGGCGGATGAGAAGATGCAATCTGCTACTACAAGTTCTGTTTCTTCAGACAAGTCAAACAAAGAGTCAAACTCACGGGCAGACCTTATCCCTGAAACACCACCAAAGTTGAAACCCAAGGGAAAAAGTCCTCCTACAAAGCCGCCCACTGATAAGAGGAATGATAAACCTCTGAGAAAACAAAATGCTGGAGTTACCCCTGTGAAAAAATCTAAGAATTCTCCTATTAGAAGTTTAATATCACAAGATCGGAGTAGGAATTCGACTGAATCTACATCAGACAAGCCAGAGATGGGGCCAGTTTTACTAAAGCAAGCAAGAGATTTGATTTCATCAGGAGACAATCCACAGAAGGCTCTTGAATTAGCTCTTCGAGCAATGAGATTGTTTGAGAAGCATGCTGATGGAAAGCCAAGTTTGGAACTGGTTATGTGTCTTCATGTTACTGCAGCAATATATTCTAGCCTAGGCCAATACCATGAGGCAATTCCAATTCTTCAGCACTCCACTGAAATTCCTGCCATTGAGGAAGGGCCAGATCACGTCCTTGCTAAGTTTGCAGGTCACATGCAATTAGGTGACACCTATGCAATGTTGGGCCAGCTTGAAAATTCAATTATGTGCTACACCATAGGGTTGGAAGTCCAGCGGAAAGTCTTTGGAGAAACAGACCCAAGATTTGGTGAAACCTGCCGGTATGTGGCTGAAGCACATGTTCAAGCGTTGCAATTTGATGAAGCTGAGAGGCTCTGCCAAATGGCTCTTGACATTCACAAAGCAAACGGTTCACCCCCTTCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTCATATGTGAAACAAAAGGAAACCATGAAGCAGCTCTTGAGCATCTAATTTTAGCCAGCATGGCAATGGTGGCTAATGGCCAGGAAGTGGAAGTGGCATCTGTTGACAGCAGCATTGGTGACACATACTTATCCTTGTCTCGGTACGACGAAGCTGTTTTTGCTTATCAGAAAGCACTCACAGTTTTCAAGACCAGCAAAGGAGAGAACCATCCAGCCGTGGGATCGATCTTTGTACGTCTGGCTGACTTGTATAACAGGATAGGGAAGATAAGGGAATCAAAATGTTACTGTGAGAGTGCACTTAGAATCTATGAGAAACCTATGCCTGGGATCCCTCCTGAGGAGACAGCAAGTGGTCTTATGGATATTTCGGCTATCTATGAGTCAATGAACGAGCTTGAACAGGCACTTAAGTTACTTCCTAAGGCACTGGAGATATATAAGAATGCCCCTGGTCGGCAAAGCACAGTTGCAGGAATTGAAGCTCAGATGGGAGTCATGCACTACATGTTGGGAAACTATACTGAATCTTATAACACGTTGAAGAATGCTATCTTGAAGCTTCGTGCTACTGGGGAGAAGAAATCAGCTTTCTTTGCTGTTGCTCTTAATCAAATGGGACTTGCTTGTGTGCAGCGATATGCATTGAGTGAGGCTACAGAACTGTTTGAAGAAGCAAAGAATATTCTGGAAAAAGAGTATGGTCCCTATCACCATGAAACGCTTGGGGTTTACAGCAATCTTGCTGGTACATATGATGCAATGGGAAGGGTGGATGAGGCAATTCAAATTTTGGAGTATGTGGTTGGAATGAGAGAGGAAAAACTTGGGACAGCGAATCCTGATGTGGATGATGAAAAGAGAAGGCTGAGTGAATTATTGAAGGAAGCAGGTAGAGTTCGGAGCAGAACAGCCAGGTCACTTGAGACCCTTCTTGACGCCAATGCACCTTCTGAAAACGGTAACATGGTCATCAACGTTCTACAAGGGAAGCTATCCAGGACTTGTGAGAAGTGCTTATTCATTCTTGTCATAAACCCAAGAAGGAGCAGAGTGAAAAAGATCAAGTTGTGA 2397 0.4414 MPGILTNGFEHNERANEMNGNPSPCKETATPIKPEGSSFSQQSPQNSGPNVPVLPVDTSIEQLYENVCDMESSDHSPSRQSLGSDGNESRIDSELCHLVGGTMREVEIIEEEVAERSRGDSFSETSSRKGTSEDGEQLVEADERIQCEKLVQEDEKIQCEELVQADEKMQSATTSSVSSDKSNKESNSRADLIPETPPKLKPKGKSPPTKPPTDKRNDKPLRKQNAGVTPVKKSKNSPIRSLISQDRSRNSTESTSDKPEMGPVLLKQARDLISSGDNPQKALELALRAMRLFEKHADGKPSLELVMCLHVTAAIYSSLGQYHEAIPILQHSTEIPAIEEGPDHVLAKFAGHMQLGDTYAMLGQLENSIMCYTIGLEVQRKVFGETDPRFGETCRYVAEAHVQALQFDEAERLCQMALDIHKANGSPPSLEEAADRRLMGLICETKGNHEAALEHLILASMAMVANGQEVEVASVDSSIGDTYLSLSRYDEAVFAYQKALTVFKTSKGENHPAVGSIFVRLADLYNRIGKIRESKCYCESALRIYEKPMPGIPPEETASGLMDISAIYESMNELEQALKLLPKALEIYKNAPGRQSTVAGIEAQMGVMHYMLGNYTESYNTLKNAILKLRATGEKKSAFFAVALNQMGLACVQRYALSEATELFEEAKNILEKEYGPYHHETLGVYSNLAGTYDAMGRVDEAIQILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRTARSLETLLDANAPSENGNMVINVLQGKLSRTCEKCLFILVINPRRSRVKKIKL 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1666 798 SUPERFAMILY TPR-like 392 549 IPR011990 GO:0005515
Prci9g1666 798 SMART tpr_5 599 632 IPR019734 GO:0005515
Prci9g1666 798 SMART tpr_5 641 674 IPR019734 GO:0005515
Prci9g1666 798 SMART tpr_5 306 339 IPR019734 GO:0005515
Prci9g1666 798 SMART tpr_5 558 591 IPR019734 GO:0005515
Prci9g1666 798 SMART tpr_5 349 382 IPR019734 GO:0005515
Prci9g1666 798 SMART tpr_5 473 506 IPR019734 GO:0005515
Prci9g1666 798 SMART tpr_5 433 466 IPR019734 GO:0005515
Prci9g1666 798 SMART tpr_5 683 716 IPR019734 GO:0005515
Prci9g1666 798 SMART tpr_5 391 424 IPR019734 GO:0005515
Prci9g1666 798 SMART tpr_5 515 548 IPR019734 GO:0005515
Prci9g1666 798 Gene3D Tetratricopeptide repeat domain 641 752 IPR011990 GO:0005515
Prci9g1666 798 MobiDBLite consensus disorder prediction 65 88 - -
Prci9g1666 798 Pfam Tetratricopeptide repeat 557 594 - -
Prci9g1666 798 Coils Coil 724 744 - -
Prci9g1666 798 Pfam Tetratricopeptide repeat 472 547 - -
Prci9g1666 798 Pfam Tetratricopeptide repeat 641 709 - -
Prci9g1666 798 MobiDBLite consensus disorder prediction 109 141 - -
Prci9g1666 798 Gene3D Tetratricopeptide repeat domain 459 637 IPR011990 GO:0005515
Prci9g1666 798 MobiDBLite consensus disorder prediction 1 95 - -
Prci9g1666 798 SUPERFAMILY TPR-like 598 740 IPR011990 GO:0005515
Prci9g1666 798 MobiDBLite consensus disorder prediction 229 258 - -
Prci9g1666 798 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 54 756 - -
Prci9g1666 798 MobiDBLite consensus disorder prediction 162 263 - -
Prci9g1666 798 MobiDBLite consensus disorder prediction 208 222 - -
Prci9g1666 798 Gene3D Tetratricopeptide repeat domain 353 458 IPR011990 GO:0005515
Prci9g1666 798 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Prci9g1666 798 MobiDBLite consensus disorder prediction 33 53 - -
Prci9g1666 798 Gene3D Tetratricopeptide repeat domain 129 352 IPR011990 GO:0005515
Prci9g1666 798 ProSiteProfiles TPR repeat profile. 558 591 IPR019734 GO:0005515
Prci9g1666 798 MobiDBLite consensus disorder prediction 12 26 - -
Prci9g1666 798 MobiDBLite consensus disorder prediction 167 183 - -
Prci9g1666 798 SUPERFAMILY TPR-like 255 379 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1666 Prci-Chr9 28904507 28908349 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1666 - - pcin:129319228 1530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2871 4 40677895 40681653 Prci9g1666 9 28904507 28908349 CCT
Prci4g2871 4 40677895 40681653 Prci9g1666 9 28904507 28908349 ECH
Prci9g1666 9 28904507 28908349 Prci9g1666 9 28904507 28908349 ECH