Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1625 ATGGAACATCACCGATCTTACAATGCCTCTTCTTCTTCCTCTTCCTCGCACCACCTTCAAACAGGTCCACGTTCTGTGTCTTCTCAACGCAGCATCGCTTCAGTCCCTTCCCTTAACTCACAATCTCGTCACCAGCAGGAAAACAAAGACCATCCTTCCACCACCTACCACAGGTGCCTCACAACTCTCAAAGGCCACACTTCCTACACATCCTGTCTTGCCCTCTCCGGGAATTTCCTCTACACAGGTTCATCTGACAGAGAAATCAGGTCATGGAATCGCACCGTTTTACGCTCTGAGCTAGACCCTGAAAATTCCATCAGCAACATAGCACTCTCAGGAAAGGGTGCAGTGAAATTCATCGTGGCTCAATCTGATAAGCTTTTCAGTGCTCACCAAGACCACAAAATCAGAGCATGGAAGATCAGCAACCATGAAAGTGACCAACAGGAGTACACGCACCTAGCCACCCTTCCAACTTTGACTGACCGTGCTTCCAAGATTTTGATCCCCAAGAACCATGTCCAGATCAGAAGGCACAAGAAATGTACGTGGGTTCATCATGTGGACACAGTCTCTGCTCTGGCCCTGTCCAAAGACGAGACCTTGCTCTATTCAGTTTCATGGGACAGGACGGTCAAAATATGGAGAACCAAAGACTTCACCTGCTTAGAATCAGTAAGCAACGCACACGACGATGCCATAAACGCGGTCGCAGTTTCCCGTGACGGGTACCTGTACACAGGATCAGCAGATAAGAGAATAAAAGTGTGGAAGAAAGGAGAAGGCGAAAAGAAGCATTCTTTGGTAGATACTTTAGAGAAACACAATTCTGGGGTCAATGCGTTGGCTCTGAGCAGTGATGAGGGTGTGTTGTATTCTGGTGCGAGTGACAGATCGATATTGGTGTGGGAGAAAGATGAAGAAGAAGATGGAAAAATGGCGTTGGTGGGGGCATTAAGAGGGCATACAATGTCCATATTGTGCTTGGCTGTGGTTCGGGATTTGGTGTGTAGTGGCTCTGCGGATAGAACGATTCGGATTTGGAGAGGAGTTGAGAAAGAATACTCGTGTTTAGCAGTTTTGGAAGGGCATAGAGGTGCCGTTAAGTGCATAGCTGCGGCGATTGATCCTTGTGATTCGTCTGAAGCTTCTATTCTAGTGTACAGTGGCAGTTTGGACTGCGACATTAAGATGTGGCAGATTGTTGTTCCAGTTTCTTAG 1224 0.4747 MEHHRSYNASSSSSSSHHLQTGPRSVSSQRSIASVPSLNSQSRHQQENKDHPSTTYHRCLTTLKGHTSYTSCLALSGNFLYTGSSDREIRSWNRTVLRSELDPENSISNIALSGKGAVKFIVAQSDKLFSAHQDHKIRAWKISNHESDQQEYTHLATLPTLTDRASKILIPKNHVQIRRHKKCTWVHHVDTVSALALSKDETLLYSVSWDRTVKIWRTKDFTCLESVSNAHDDAINAVAVSRDGYLYTGSADKRIKVWKKGEGEKKHSLVDTLEKHNSGVNALALSSDEGVLYSGASDRSILVWEKDEEEDGKMALVGALRGHTMSILCLAVVRDLVCSGSADRTIRIWRGVEKEYSCLAVLEGHRGAVKCIAAAIDPCDSSEASILVYSGSLDCDIKMWQIVVPVS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1625 407 FunFam BnaA09g28200D protein 175 263 - -
Prci9g1625 407 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 403 IPR045182 -
Prci9g1625 407 SMART WD40_4 355 401 IPR001680 GO:0005515
Prci9g1625 407 SMART WD40_4 56 93 IPR001680 GO:0005515
Prci9g1625 407 SMART WD40_4 94 141 IPR001680 GO:0005515
Prci9g1625 407 SMART WD40_4 178 217 IPR001680 GO:0005515
Prci9g1625 407 SMART WD40_4 266 305 IPR001680 GO:0005515
Prci9g1625 407 SMART WD40_4 313 350 IPR001680 GO:0005515
Prci9g1625 407 SMART WD40_4 220 259 IPR001680 GO:0005515
Prci9g1625 407 MobiDBLite consensus disorder prediction 1 54 - -
Prci9g1625 407 Pfam WD domain, G-beta repeat 58 93 IPR001680 GO:0005515
Prci9g1625 407 Pfam WD domain, G-beta repeat 270 304 IPR001680 GO:0005515
Prci9g1625 407 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
Prci9g1625 407 Pfam WD domain, G-beta repeat 317 349 IPR001680 GO:0005515
Prci9g1625 407 Pfam WD domain, G-beta repeat 186 216 IPR001680 GO:0005515
Prci9g1625 407 Pfam WD domain, G-beta repeat 357 400 IPR001680 GO:0005515
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 305 IPR001680 GO:0005515
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 259 - -
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 185 216 - -
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 305 - -
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 349 IPR001680 GO:0005515
Prci9g1625 407 MobiDBLite consensus disorder prediction 7 43 - -
Prci9g1625 407 SUPERFAMILY WD40 repeat-like 56 402 IPR036322 GO:0005515
Prci9g1625 407 Gene3D - 51 174 IPR015943 GO:0005515
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 349 - -
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 63 93 - -
Prci9g1625 407 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Prci9g1625 407 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Prci9g1625 407 PRINTS G protein beta WD-40 repeat signature 337 351 IPR020472 -
Prci9g1625 407 CDD WD40 59 401 - -
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 268 IPR001680 GO:0005515
Prci9g1625 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 63 93 IPR001680 GO:0005515
Prci9g1625 407 Gene3D - 175 404 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1625 Prci-Chr9 28726258 28727712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1625 230 402 Miscellaneous Gene Families AT5G08390 25.698 4.47e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1625 - - qsa:O6P43_022753 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2927 4 41052579 41054205 Prci9g1625 9 28726258 28727712 CCT
Prci4g2927 4 41052579 41054205 Prci9g1625 9 28726258 28727712 ECH
Prci9g1625 9 28726258 28727712 Prci9g1625 9 28726258 28727712 ECH