Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2927 ATGGAGTTCCACAGATCGTCTTCTTCATCCAACCATATTCAATCTAGACCAACGTCTCTGTCTTCACAACGCAGCCTTGCTTCAGTTCCTTCCCTGAACTCTCGGTCTCAGCATCACACCTCAACCTATCACCAGTGTCTTGCAACTCTCAAAGGTCACACATCTTATATATCCTGTATAGCCCTTGCAGGGAAATTCCTCTACACTGGATCATCTGATGGAGAAATCAGGTCCTGGAATCATGCTTGCTTTCACTCTCAAATATTCGACCCTGAACAGTCAAATTCATCAATCACTAACATGGTGACGGCAGGTAAAGGTGCAGTGAAGTCCATAATAGTTCAGTCTGATAAACTCTTCAGCGCTCACCAAGACTATAAAATCAGAGTCTGGAAAATTAGCGGCGACGAGCCTGACCGCCACAAGTACACCCGTTTAGCCACACTTCCGACGTTTGGTGACAGAGCCACGAAGGTGTTGAATCCCAAGAACCATGTTCAGATAAGGAGGCACAAAAAATGCACCTGGGTTCACCATGTGGATACAGTCTCTGCTCTGGCCTTGTCCAGGGATGAGACCTTGCTTTACTCAGTTTCATGGGATCGTACAATCAAAGTCTGGCGAACCAGTGACTTCGGATGTTTGGAATCAGTGAACAACGCGCACGATGATGCTATAAACGCCTTAGCAGTTTCTGAGGACGGTTACATATACACTGGATCAGCAGATAAGAAGATCAAGGTATGGAAAAAAGGCGAAGGAGGGGAGAAACATTGTCTGGTTGATACGTTAGAGAAGCACAACTCTGGGATTAATGCTTTGGCTCTGAGCAGTGATGGGTCTCTGTTGTATTCAGGTGCTTGCGACAGATCAATATTGGTTTGGGCAAAGGATGGAGAAGAAGAAGATGGCAAAATGGTGCTGGTGGGTGCGCTTAGGGGACACACCAAGTCCATATTATGCTTAGCCATGGTCTCAGATTTGGTGTGTAGTGGTTCTGCAGATAAAACAATAAGAATATGGAGAGGCGTTCATGATGATTGCTCTTGTTTAGCAGTTTTAGAAGGCCATAGTGGTCCGATTAAGTGCTTAACTGCAGCCAGTGGTCGTTCTAATCCGTCTGAAGAATCTTTTCTAGTTTACAGTGGCAGTTTGGACTGTGACATTAAGGTGTGGCAGATCATCGTACCTGTTCTCTAG 1200 0.4558 MEFHRSSSSSNHIQSRPTSLSSQRSLASVPSLNSRSQHHTSTYHQCLATLKGHTSYISCIALAGKFLYTGSSDGEIRSWNHACFHSQIFDPEQSNSSITNMVTAGKGAVKSIIVQSDKLFSAHQDYKIRVWKISGDEPDRHKYTRLATLPTFGDRATKVLNPKNHVQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTIKVWRTSDFGCLESVNNAHDDAINALAVSEDGYIYTGSADKKIKVWKKGEGGEKHCLVDTLEKHNSGINALALSSDGSLLYSGACDRSILVWAKDGEEEDGKMVLVGALRGHTKSILCLAMVSDLVCSGSADKTIRIWRGVHDDCSCLAVLEGHSGPIKCLTAASGRSNPSEESFLVYSGSLDCDIKVWQIIVPVL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 80 IPR001680 GO:0005515
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 341 - -
Prci4g2927 399 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Prci4g2927 399 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Prci4g2927 399 PRINTS G protein beta WD-40 repeat signature 329 343 IPR020472 -
Prci4g2927 399 FunFam BnaA09g28200D protein 166 254 - -
Prci4g2927 399 Gene3D - 257 397 IPR015943 GO:0005515
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 250 IPR001680 GO:0005515
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 341 IPR001680 GO:0005515
Prci4g2927 399 SMART WD40_4 211 250 IPR001680 GO:0005515
Prci4g2927 399 SMART WD40_4 257 296 IPR001680 GO:0005515
Prci4g2927 399 SMART WD40_4 347 393 IPR001680 GO:0005515
Prci4g2927 399 SMART WD40_4 305 342 IPR001680 GO:0005515
Prci4g2927 399 SMART WD40_4 169 208 IPR001680 GO:0005515
Prci4g2927 399 SMART WD40_4 43 80 IPR001680 GO:0005515
Prci4g2927 399 SMART WD40_4 95 132 IPR001680 GO:0005515
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 295 IPR001680 GO:0005515
Prci4g2927 399 SUPERFAMILY WD40 repeat-like 44 394 IPR036322 GO:0005515
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 250 - -
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 80 - -
Prci4g2927 399 Pfam WD domain, G-beta repeat 309 341 IPR001680 GO:0005515
Prci4g2927 399 Pfam WD domain, G-beta repeat 261 295 IPR001680 GO:0005515
Prci4g2927 399 Pfam WD domain, G-beta repeat 349 392 IPR001680 GO:0005515
Prci4g2927 399 Pfam WD domain, G-beta repeat 220 250 IPR001680 GO:0005515
Prci4g2927 399 Pfam WD domain, G-beta repeat 177 207 IPR001680 GO:0005515
Prci4g2927 399 Pfam WD domain, G-beta repeat 45 80 IPR001680 GO:0005515
Prci4g2927 399 CDD WD40 46 393 - -
Prci4g2927 399 MobiDBLite consensus disorder prediction 1 36 - -
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 207 - -
Prci4g2927 399 Gene3D - 156 256 IPR015943 GO:0005515
Prci4g2927 399 Gene3D - 2 155 IPR015943 GO:0005515
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 217 IPR001680 GO:0005515
Prci4g2927 399 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 394 IPR045182 -
Prci4g2927 399 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2927 Prci-Chr4 41052579 41054205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2927 169 394 Miscellaneous Gene Families AT5G08390 23.605 2.14e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2927 - - qsa:O6P43_022753 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2927 4 41052579 41054205 Prci9g1625 9 28726258 28727712 CCT
Prci4g2927 4 41052579 41054205 Prci9g1625 9 28726258 28727712 ECH
Prci4g2927 4 41052579 41054205 Prci4g2927 4 41052579 41054205 ECH