Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g0539 ATGGCGGCGACTCTTCCCGTTGGGATTCTCATGGCCACCATTGCATTATTTTTTTGTCAGACGACGACGGTAATATGTGAATTTCCGATGACCCTGCCTCTCGAAAGAGCAATTCCGTTGAGAAATGAAATGAAATTGAGTGAGCTCAAAGCTCTGGACCATGCTAGACATCGAAGGTTGATTCAATCTTCCAATGATACTGATTTCCCACTCGAGGGCACCTATGATCCTTACGTAGCCGGGCTTTATTATACAAAGGTGCAATTGGGTTCTCCCCCGAGAGATTTTCATTTGCAAGTAGACACAGGCAGCGACCCTCTCTGGGTCACCTGTAGCTCCTGTTCAGGCTGTCCCCACAAAACCCAACTTCAAATCAAGCTCAGTTCCTTCGATCCTGGGAAATCATCCACGTACTCACCGGTAACTTGTTCAGACGCGATATGCAGCAGCGAATATCAGACGCCCGAAGCCGTGTGTTCCAGTGATAATCGCTGCACTTACACGTTCCAGTACGCTGATGACAGTGCCTCTGCTGGTTACTACGTCTCAGACCTCATTTATTTTGCCACCGCCATTTCCAACGGTTCTTCACCTCTCATCTTCGGATGTAGCAAGGAGTTGACGGGCAACTTGGTGAAGAATGAAAGAGGAGTGGATGGGATAATAGGATTTGGGCAAGGTGACATATCAGTAGTATCACAGCTCTCTTCAAAAGGATTAGTGCCAAAAGTGTTCTCTCACTGCCTCCGAGGCGATGATCAAGGCGGAGGCACCTTGGTCCTCGGTGAGATTGTGGAGCCAAATATTGTTTTCACACCACTCATTCCTTCCTGGCCTCATTACAATTTAGATCTCAAGGGCATCGAGGTGAAAGGCCAGAAGTTAGCGATTGACTCATCGGTTTTTCAAACATTACCGAACCAAGGCACCGTTATTGATTCTGGAACAACTATGGCATACCTTCCTGAAGGGGTTTACGAATCCTTTCTCAACGCGGTTTCGGATGCTGTTCCAGTAGAATCGCTTGCCGGCACTTACGTTGCGGATGGATCCCAATGTTTCTTCACATTAAATAGCATATCTGAAGTTTTTCCTAACATAAGTTTGAACTTTGCTGGCGGTGCATCTATGGTTCTTAAACCCAAGGACTACCTAGTGCATCACATGACTTTAAATGACGGTGAAACAGGGTGGTGCATTGGCATTCAGAAAATGCAGGGCTCTCAAGGGTTCACTATTTTAGGAGATATTGTATTAAAGGATAGGATTATAGTTTATGATCTGGCTGGCCAACGCATCGGATGGGCCGACTATGACTGCTCGAAGTCCTTCAACGTGTCTGTAAAATTGACCAGTGCATCAGGGTCGTCTAGTGTGGGTACGTCAACGGATTGGCCACTTATTAAGAAGCGAACCTTAGCTTTCTTCGTGTCTTTGATCTGCTGCTTCTTGTTATTTTAG 1461 0.4634 MAATLPVGILMATIALFFCQTTTVICEFPMTLPLERAIPLRNEMKLSELKALDHARHRRLIQSSNDTDFPLEGTYDPYVAGLYYTKVQLGSPPRDFHLQVDTGSDPLWVTCSSCSGCPHKTQLQIKLSSFDPGKSSTYSPVTCSDAICSSEYQTPEAVCSSDNRCTYTFQYADDSASAGYYVSDLIYFATAISNGSSPLIFGCSKELTGNLVKNERGVDGIIGFGQGDISVVSQLSSKGLVPKVFSHCLRGDDQGGGTLVLGEIVEPNIVFTPLIPSWPHYNLDLKGIEVKGQKLAIDSSVFQTLPNQGTVIDSGTTMAYLPEGVYESFLNAVSDAVPVESLAGTYVADGSQCFFTLNSISEVFPNISLNFAGGASMVLKPKDYLVHHMTLNDGETGWCIGIQKMQGSQGFTILGDIVLKDRIIVYDLAGQRIGWADYDCSKSFNVSVKLTSASGSSSVGTSTDWPLIKKRTLAFFVSLICCFLLF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g0539 486 Gene3D Acid Proteases 264 448 IPR021109 -
Prci6g0539 486 SUPERFAMILY Acid proteases 78 444 IPR021109 -
Prci6g0539 486 Pfam Xylanase inhibitor C-terminal 280 436 IPR032799 -
Prci6g0539 486 FunFam Aspartic proteinase-like protein 2 264 447 - -
Prci6g0539 486 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Prci6g0539 486 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Prci6g0539 486 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Prci6g0539 486 Pfam Xylanase inhibitor N-terminal 83 262 IPR032861 -
Prci6g0539 486 ProSiteProfiles Peptidase family A1 domain profile. 83 436 IPR033121 -
Prci6g0539 486 PANTHER ASPARTYL PROTEASES 19 434 IPR001461 GO:0004190|GO:0006508
Prci6g0539 486 CDD pepsin_A_like_plant 83 440 IPR034161 -
Prci6g0539 486 Gene3D Acid Proteases 57 263 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g0539 Prci-Chr6 3447648 3450460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g0539 58 442 Miscellaneous Gene Families AT1G44130 28.395 3.64e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci6g0539 - - pcin:129313214 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2447 7 37112183 37117059 Prci6g0539 6 3447648 3450460 CCT