Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1693 ATGGCATCTGACGGCGTTGCTGGGTCCACCGATTTGCCTGCGAAGAGGCAGAGAGAAGATGGAGAGAATGGGGTCGCTGCTTCGACCGTCTCTGCGGAGGCGGAAGGTAATGGTGTATCAGCTGTGATTCCTGGGTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGGGAAGCACACTCTTTGAAGGTTGAAAAGATCTTGTTTAAAGGGAAGTCTGATTACCAGGATGTCATGGTTTTCCAGTCATCAACATATGGTAAAGTTCTTGTTTTGGATGGAGTAATTCAGCTCACTGAAAGGGATGAATGTGCCTACCAAGAGATGATCGCTCATCTTCCTCTATCCTCTATTCCAAATCCCAAGAAGGTTTTGGTTATTGGTGGAGGGGACGGTGGTGTCATACGGGAAGTGTCACGCTATTCTTCAGTTGAGAAGATAGACATTTGCGAAATTGACAAGATGGTAGTTGATGTCTCAAAGCAGTTTTTCCCTGCAATGGCAGTAGGGTATGAGGATCCACGTGTGACGCTTCATATTGGTGATGGGGTTGCATTCTTGAGGGAAGTTCCAGAAGCAACTTATGATGCAGTTATTGTGGATTCATCTGACCCTATAGGCCCTGCTCAAGAGCTTTTTGAGAAGCCCTTTTTCCAGTCGGTTGCAAAGGCTCTTCGTCCTGGAGGAGTTGTGTGTACTCAGGCAGAAAGTATATGGCTTCATATGCATATCATTGAGGACATAGTCGCGAACTGTCGCCAGATATTCAAGGGCTCTGTAAACTATGCTTGGACTACAGTTCCTACATACCCAAGTGGGGTGATTGGTTTTATGCTTTGCTCAACTGAGGGACCTCTTGTTGATTTCAAGCATCCTGTGAATCCCATCGATCAGAATCCCAGTCAGAAATCAGACAGACCACTGAAGTTTTACAACTCTGAGATTCACACAGCAGCTTTCTGTCTGCCATCTTTTGCCAAGAAGGTGATTGAATCGAAATCAGAGTGA 1005 0.4607 MASDGVAGSTDLPAKRQREDGENGVAASTVSAEAEGNGVSAVIPGWFSEISPMWPGEAHSLKVEKILFKGKSDYQDVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLSSIPNPKKVLVIGGGDGGVIREVSRYSSVEKIDICEIDKMVVDVSKQFFPAMAVGYEDPRVTLHIGDGVAFLREVPEATYDAVIVDSSDPIGPAQELFEKPFFQSVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPLVDFKHPVNPIDQNPSQKSDRPLKFYNSEIHTAAFCLPSFAKKVIESKSE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1693 334 PIRSF Spermidine_synth 35 334 IPR030668 GO:0006595
Prci5g1693 334 FunFam Spermidine synthase 1 97 334 - -
Prci5g1693 334 Hamap Polyamine aminopropyltransferase [speE]. 45 330 IPR001045 GO:0003824
Prci5g1693 334 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
Prci5g1693 334 FunFam Spermidine synthase 1 37 96 - -
Prci5g1693 334 Pfam Spermine/spermidine synthase domain 102 289 - -
Prci5g1693 334 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
Prci5g1693 334 NCBIfam spermidine synthase 46 324 IPR001045 GO:0003824
Prci5g1693 334 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Prci5g1693 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 330 IPR029063 -
Prci5g1693 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Prci5g1693 334 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Prci5g1693 334 MobiDBLite consensus disorder prediction 1 30 - -
Prci5g1693 334 PANTHER SPERMIDINE/SPERMINE SYNTHASE 38 332 IPR001045 GO:0003824
Prci5g1693 334 CDD AdoMet_MTases 144 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1693 Prci-Chr5 35415172 35418927 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1693 K00797 - twl:119999310 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1735 10 12828501 12833283 Prci5g1693 5 35415172 35418927 CCT
Prci5g1693 5 35415172 35418927 Prci5g1693 5 35415172 35418927 ECH