Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1735 ATGGCCGAAGAGAGCGTCGTTGAGTCTAGCGATTTGCCGGTCAAGAGGCAGAGGGAAGACGAAGAGAATGGAGCCTCTGCTTCTACCGTTTCCATGGAGACAGACTTGAATGGCGGTGAACATCCTGATTTTATGTCGTCTGTGATTCCTGGCTGGTTCTCCGAAGTTAGCCCAATGTGGCCTGGAGAGGCACACTCCTTAAAAGTTGAGAAGATCTTATTTCAAGGGAAGTCTGATTACCAGAATGTGATGGTCTTCCAGTCATCATCGTATGGAAAGGTTCTTGTTTTGGATGGTGTAATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCACACATCTTCCTTTGTGCTCGATTCCAAATCCCAAGAAGGTTTTGGTTATTGGTGGTGGAGATGGTGGGGTCTTGCGGGAAGTTTCACGGCATTCTTCTGTTGAAAAGATAGACATTTGTGAAATTGACAAAATGGTAGTTGATGTCTCCAAACAATTTTTCCCTGAAGTAGCTGTAGGGTTTGATGATCCACGTGTGACACTTCATATTGGTGATGGAGTTGCATTTTTGAAAGATGTTCCAGCAGGAACTTATGATGCAATCATAGTTGACTCATCTGACCCTATAGGTCCTGCTCAAGAGCTTTTTGAAAAACCCTTTTTTGAGTTGGTTGCTAAGGCTCTTCGTCCAGGAGGGGTTGTGAGTACGCAGGCTGAAAGCATATGGCTTCATATGCATATTATTGAGGGCCTTGTTGCCAATTGTCGCCAGATATTTAAAGGCTCTGTTGACTATGCTTGGACTTCAGTTCCAACATACCCTAGTGGGGTGATTGGTTTTATGCTGTGCTCGACCGACGGACCTCCTGTTGATTTCAAGCATCCGGTGAACCCCATAGATGCAAACGATAATCAGAAGTCTGTAAGACCACTGAAGTTTTACAACTCTGAGATTCATGCTGCGGCATTTTGCCTTCCATCGTTTGCCAGGAGGGCGATTGATTCTAAAGCAAATTGA 1023 0.4477 MAEESVVESSDLPVKRQREDEENGASASTVSMETDLNGGEHPDFMSSVIPGWFSEVSPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPEVAVGFDDPRVTLHIGDGVAFLKDVPAGTYDAIIVDSSDPIGPAQELFEKPFFELVAKALRPGGVVSTQAESIWLHMHIIEGLVANCRQIFKGSVDYAWTSVPTYPSGVIGFMLCSTDGPPVDFKHPVNPIDANDNQKSVRPLKFYNSEIHAAAFCLPSFARRAIDSKAN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1735 340 PANTHER SPERMIDINE/SPERMINE SYNTHASE 43 338 IPR001045 GO:0003824
Prci10g1735 340 Pfam Spermine/spermidine synthase domain 108 295 - -
Prci10g1735 340 FunFam Spermidine synthase 1 103 340 - -
Prci10g1735 340 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 129 142 IPR030373 -
Prci10g1735 340 MobiDBLite consensus disorder prediction 9 23 - -
Prci10g1735 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 336 IPR029063 -
Prci10g1735 340 CDD AdoMet_MTases 128 236 - -
Prci10g1735 340 Pfam Spermidine synthase tetramerisation domain 51 105 IPR035246 -
Prci10g1735 340 FunFam Spermidine synthase 1 43 102 - -
Prci10g1735 340 PIRSF Spermidine_synth 41 340 IPR030668 GO:0006595
Prci10g1735 340 Gene3D Vaccinia Virus protein VP39 103 340 IPR029063 -
Prci10g1735 340 Hamap Polyamine aminopropyltransferase [speE]. 51 336 IPR001045 GO:0003824
Prci10g1735 340 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 50 287 IPR030374 -
Prci10g1735 340 MobiDBLite consensus disorder prediction 1 33 - -
Prci10g1735 340 Gene3D Spermidine synthase, tetramerisation domain 44 102 IPR037163 -
Prci10g1735 340 NCBIfam spermidine synthase 52 330 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1735 Prci-Chr10 12828501 12833283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1735 K00797 - pop:7459055 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1735 10 12828501 12833283 Prci5g1693 5 35415172 35418927 CCT
Prci10g1735 10 12828501 12833283 Prci10g1735 10 12828501 12833283 ECH