Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0432 ATGGCCGTTCAGGCTCAATATCCTTCTAACGTCCTCCTCCTCAATCCCAGAAACTTCCCAGAAGATTATGACTCTCCATTGCCCCCTGCAGAAGCACTTAATCACTCTCATGCCTTATTCAACAATGGAGGTATTCCTCAATTCCCAGATTGTATAACCGTCCATGGGGTTTACTCACGCAAGCCCCAATGTTGTGAATTCCTCTCTCTGCAATCTCCTCAACTCGTAGACCTCTCGCAGCTGCATAACCACCACCACAATAGCGTCTCCACCGGCCTCCGTTTATCCTCCTTCGCCGATCGCCGGCCACTTCACTTGCCTCACAACCACCAGCAATCACCCCAAGATTTCTCTCATTACTTATCCTCATCGTCTCCGTTTTCTCAAGATTTTGTCTCTCAAATCAAACAACATGCTGATGAAATAGACCAATTCATTCGAGCGCAGGAAGCGGAATTGCATCGGACATTGGCGGAGAAAAGGCAGAGACATTACCGAGCGCTACTAACCACGGCGGAAGAAACCGTGGCGCGGCGGTTGAGAGAGAGAGAGCTAGAGGTGGAAAAGGTCGCGCGCATGAACGCCGAGTTAGAGGCACGCGCCGCTCAACTCAGCGCCGAGGCACAGCTTTGGCAGGCGAAGGCAAAAGCACAGGAAGCAACAGCCGCTTCCTTACAGGCCCAACTGCAACAGGCCATGATGAACGGCGCAGCGGCCTTAGAAAGAAGAGACGAGGGCGGGCTATCGTGCGCGGCGGGCGCCGATGACGCCGAGTCGGCTTACGTCGACCCGGACCGAGTCGAACCGACCGGACCCGAATGCAGAGGGTGTGGGGAGAGGGTGGCGTCGGTGGTGGTATTGCCGTGTCGGCATCTGTGCTTGTGTATCAAATGCAACGTCCATTACCGAGCATGTCCGGTTTGCCTTACGCTCAAAGATTCAACCGTTGAGGTTTTTTTTTCCTAG 966 0.5383 MAVQAQYPSNVLLLNPRNFPEDYDSPLPPAEALNHSHALFNNGGIPQFPDCITVHGVYSRKPQCCEFLSLQSPQLVDLSQLHNHHHNSVSTGLRLSSFADRRPLHLPHNHQQSPQDFSHYLSSSSPFSQDFVSQIKQHADEIDQFIRAQEAELHRTLAEKRQRHYRALLTTAEETVARRLRERELEVEKVARMNAELEARAAQLSAEAQLWQAKAKAQEATAASLQAQLQQAMMNGAAALERRDEGGLSCAAGADDAESAYVDPDRVEPTGPECRGCGERVASVVVLPCRHLCLCIKCNVHYRACPVCLTLKDSTVEVFFS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0432 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 321 IPR013083 -
Prci5g0432 321 ProSiteProfiles Zinc finger RING-type profile. 274 308 IPR001841 -
Prci5g0432 321 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 82 318 IPR017066 -
Prci5g0432 321 CDD mRING-HC-C3HC5_CGRF1-like 272 308 - -
Prci5g0432 321 PIRSF SBP1_RNase_bind 1 321 IPR017066 -
Prci5g0432 321 Pfam Zinc finger, C3HC4 type (RING finger) 273 309 - -
Prci5g0432 321 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 256 320 - -
Prci5g0432 321 Coils Coil 180 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0432 Prci-Chr5 5679995 5681681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0432 274 310 Miscellaneous Gene Families AT2G21380 43.243 4.72e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0432 K19042 - gmx:100797727 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0713 10 4883157 4885717 Prci5g0432 5 5679995 5681681 CCT
Prci5g0432 5 5679995 5681681 Prci5g0432 5 5679995 5681681 ECH