Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g1418 ATGGCTGTTTCCATGAGGGACTTGGATCCATGTTTCCAGGGAGCTGGACAAAAGGCTGGACTAGAAATATGGCGTATTGAGAATTTTAATCCTGTTCCCATCCCCAAGTCCTCTTATGGGAAGTTTTTCACTGGGGACTCCTACGTAATCTTGAAGACAACTGCTTCAAAGAGTGGTGCCCTGCGTCATGATATTCATTACTGGCTTGGAAAAGACACCAGTCAGGATGAAGCTGGTGCTGCAGCAGTCAAGACAGTTGAGCTGGATGCAGCTCTTGGAGGTCGTGCTGTTCAATATCGTGAAGTGCAGGGTCATGAAACTGAAAAGTTCCTATCGTACTTCAAACCCTGTATTATACCTCAAGAAGGAGGAGTTGCCTCAGGTTTCAAGCATGTAGAGGCTGAAGAATATAAGACACGAATGTTTGTATGCAAAGGCAAACATGTTGTGCATGTCAAAGAGGTCCCTTTTGCCCGATCCTCACTAAACCATGATGATATATTTATTCTGGATACAAAATCCAAAATCTTCCAATTTAATGGTTCAAATTCATCAATTCAAGAAAGGGCTAAAGCGTTGGAAGTTGTACAATATATTAAAGATACACACCATGATGGAAAATGCGAGATAGCTGCTATTGAGGATGGAAAGTTGATGGCTGATCCTGAAACGGGAGAATTCTGGGGTTTCTTTGGGGGTTTTGCCCCTCTTCCGCGAAAACCAGCTAGTGATGATGATCAGCATGTTGATGCTCATCCTCCAAAGCTGCTTTGCATTGAAAAGGGGCTAGCTGAACCTGTTAAGAATGATTCTCTAACAAGGGAGTTACTGGACACAAATAAATGCTATATTCTCGATTGTGGGTTGGAAGTGTTTGTCTGGATGGGAAGAAGTACATCTCTTGATGAAAGAAAAAGTGCAAGCGGAGCAGCTGATGAGTTGGTCAGTGGCTCTGATCGACAGAAATCCCAGATAGTTCGCGTAATTGAAGGATTTGAAACGGTGATGTTCAAGTCCAAGTTTGATTCTTGGCCTCCGACGACTGAAGTAACTGTGTCTGAAGATGGTCGTGGGAAGGTGGCAGCACTTCTAAAACGCCAAGGAGTGAATGTCAGGGGTCTGCTGAAAGCCGATCCAGTAAAAGAAGAACCTCAACCCTATATTGATTGCACAGGAAATTTGCAGGCTTGGCGTGTAAATGGTCAGGAAAAGATTCTTCTTCCTGCTGCTGATCAGTCAAAGTTTTATAGTGGAGATTGCTACATCTTTCAGTATACGTATCCTGGAGAGGAAAAGGAAGAGTATCTTATAGCAACGTGGATTGGAAAGACTAGTATTGAGGAGGAAAGAGCTTCAGCTATTTCACTAGCAAGCAAAATGGTTGAGTCATTGAAGTTTCTTCCTTCCCAGACTCGTATTTATGAAGGGAATGAGCCAATTCAATTTTATACTATCTTCCAAAGCTTGATTGTTTTTAAGGGTGGGCTCAGTGAAGGATACAAAAATCACATTGCGGAAAAGGAAATTCCTGATGATACATACAGTGAAGATGGTGTTGCATTATTTCGCATCCAGGGTTCAGGCCCAGATAATATGCAAGCTATACAAGTTGAACCAATTGCTTCCTCCTTGAATTCCTCTTATTGCTACATACTTCACAATGGGTCCACTGTTTACACATGGACTGGAAGCCTTACAACGTCAGATGTTCAGGAACTTGTTGAGAGGATGTTGGATTTGATAAAGCCGAATTTACAATCAAAGCCACAGAAGGAAGGGTCAGAATCTGAACAGTTTTGGGATCTGTTGGGAGGAAAATTGGAATATCCTAGCCAGAAGATTGTAAGGTCAGCAGAAAGTGATCCCCATCTATTTTCTTGCAACTTCTCCAAAGGGAATTTGAAGGTGACAGAGATATTCAATTTTTCCCAGGATGATTTGATGACTGAAGATATTTTCATCTTATATTGTCACTCTGAAATCTTTGTCTGGGTTGGCCAGCAGGTTGATCCCAAGAGTAGAATGCAGGCTCTAACAATTGGAGAGAAATTTCTTGAGCTCGATTTTCTTTTAGAAGAAGTGTCTCATGAAACTCCGATATACATTGTCATGGAAGGGAGTGAGCCTCCTTTCTTCACTCGTTTCTTCACTTGGGAGTCTGCAAAATCTTCAATGCTGGGAAATTCGTTCCAGAGGAAACTTACAATAGTAAAAAATGGGGGAACTCCAACTGTGGATAAACCCAAACGAAGAACACCGGCATCCTATGGGGGAAGATCTAGCAGTGTACCGGATAAATCCCAGCGCTCTCGCAGCATGTCTTTTAGTCCAGATCGTGTTCGTGTGCGGGGCAGGTCTCCAGCCTTCAATGCCTTAGCAGCTGCATTTGAGAACCCTAATGCTAGGAACCTTTCAACTCCACCTCCAGTAGTTAGGAAACTGTATCCCAAATCTGTGACCCCAGATTCAGCAAAATCGGCACCCAAATCCTCAGCCATAGCAGCACTTAGTTCTAGCTTTGAACAACCGCCTTCAGCTCGAGATAGTATGATACCTCGGTCAATCAAAGTGAATCAGAGTCCAGAGGCTCCCAAACCTAAGCCTGAGACAAACAATAAGGAGAATTCCATGACCAGATTAGGATCTCAAACCATAACAGAAGATGTGAAAGAGGGTGAAGCTGAAGATGAGGAAGGTCTTCTAATTTACCCATATGAACGCCTCAAAATATCATCTACCAATCCTGTAACAGACATTGATGTGACTAAGCGAGAGACTTATCTATCATCTGTTGAGTTCAAAGAGAAATTCGGGATGACAAAAGATGCCTTTTACAAGTTGCCAAAATGGAAACAGAACAAATTCAAGATGGCCGTCCAGTTATTCTGA 2889 0.4268 MAVSMRDLDPCFQGAGQKAGLEIWRIENFNPVPIPKSSYGKFFTGDSYVILKTTASKSGALRHDIHYWLGKDTSQDEAGAAAVKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGFKHVEAEEYKTRMFVCKGKHVVHVKEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYIKDTHHDGKCEIAAIEDGKLMADPETGEFWGFFGGFAPLPRKPASDDDQHVDAHPPKLLCIEKGLAEPVKNDSLTRELLDTNKCYILDCGLEVFVWMGRSTSLDERKSASGAADELVSGSDRQKSQIVRVIEGFETVMFKSKFDSWPPTTEVTVSEDGRGKVAALLKRQGVNVRGLLKADPVKEEPQPYIDCTGNLQAWRVNGQEKILLPAADQSKFYSGDCYIFQYTYPGEEKEEYLIATWIGKTSIEEERASAISLASKMVESLKFLPSQTRIYEGNEPIQFYTIFQSLIVFKGGLSEGYKNHIAEKEIPDDTYSEDGVALFRIQGSGPDNMQAIQVEPIASSLNSSYCYILHNGSTVYTWTGSLTTSDVQELVERMLDLIKPNLQSKPQKEGSESEQFWDLLGGKLEYPSQKIVRSAESDPHLFSCNFSKGNLKVTEIFNFSQDDLMTEDIFILYCHSEIFVWVGQQVDPKSRMQALTIGEKFLELDFLLEEVSHETPIYIVMEGSEPPFFTRFFTWESAKSSMLGNSFQRKLTIVKNGGTPTVDKPKRRTPASYGGRSSSVPDKSQRSRSMSFSPDRVRVRGRSPAFNALAAAFENPNARNLSTPPPVVRKLYPKSVTPDSAKSAPKSSAIAALSSSFEQPPSARDSMIPRSIKVNQSPEAPKPKPETNNKENSMTRLGSQTITEDVKEGEAEDEEGLLIYPYERLKISSTNPVTDIDVTKRETYLSSVEFKEKFGMTKDAFYKLPKWKQNKFKMAVQLF 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g1418 962 FunFam Villin-4 385 519 - -
Prci4g1418 962 SUPERFAMILY VHP, Villin headpiece domain 886 962 IPR036886 GO:0003779|GO:0007010
Prci4g1418 962 CDD gelsolin_S2_like 138 223 - -
Prci4g1418 962 FunFam Villin-like 1 132 247 - -
Prci4g1418 962 MobiDBLite consensus disorder prediction 737 782 - -
Prci4g1418 962 CDD gelsolin_S3_like 254 343 - -
Prci4g1418 962 Pfam Villin headpiece domain 927 962 IPR003128 GO:0003779|GO:0007010
Prci4g1418 962 CDD gelsolin_S5_like 517 606 - -
Prci4g1418 962 CDD gelsolin_S1_like 12 124 - -
Prci4g1418 962 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 255 427 IPR036180 -
Prci4g1418 962 SUPERFAMILY Actin depolymerizing proteins 511 612 - -
Prci4g1418 962 Gene3D Villin headpiece domain 900 962 IPR036886 GO:0003779|GO:0007010
Prci4g1418 962 FunFam Gelsolin 6 131 - -
Prci4g1418 962 MobiDBLite consensus disorder prediction 864 881 - -
Prci4g1418 962 FunFam Villin-like 1 900 962 - -
Prci4g1418 962 SUPERFAMILY Actin depolymerizing proteins 129 242 - -
Prci4g1418 962 SMART VHP_1 927 962 IPR003128 GO:0003779|GO:0007010
Prci4g1418 962 FunFam Villin-4 248 354 - -
Prci4g1418 962 SUPERFAMILY Actin depolymerizing proteins 595 717 - -
Prci4g1418 962 CDD gelsolin_S4_like 386 486 - -
Prci4g1418 962 MobiDBLite consensus disorder prediction 755 775 - -
Prci4g1418 962 Gene3D Severin 614 734 IPR029006 -
Prci4g1418 962 MobiDBLite consensus disorder prediction 856 881 - -
Prci4g1418 962 PANTHER VILLIN 11 952 IPR007122 GO:0051015
Prci4g1418 962 ProSiteProfiles Headpiece (HP) domain profile. 897 962 IPR003128 GO:0003779|GO:0007010
Prci4g1418 962 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Prci4g1418 962 Gene3D Severin 381 520 IPR029006 -
Prci4g1418 962 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Prci4g1418 962 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Prci4g1418 962 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Prci4g1418 962 PRINTS Gelsolin family signature 673 692 IPR007122 GO:0051015
Prci4g1418 962 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Prci4g1418 962 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Prci4g1418 962 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Prci4g1418 962 PRINTS Gelsolin family signature 644 666 IPR007122 GO:0051015
Prci4g1418 962 Gene3D Severin 7 132 IPR029006 -
Prci4g1418 962 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Prci4g1418 962 MobiDBLite consensus disorder prediction 799 830 - -
Prci4g1418 962 Pfam Gelsolin repeat 409 482 IPR007123 -
Prci4g1418 962 Pfam Gelsolin repeat 150 216 IPR007123 -
Prci4g1418 962 Pfam Gelsolin repeat 267 337 IPR007123 -
Prci4g1418 962 Pfam Gelsolin repeat 638 712 IPR007123 -
Prci4g1418 962 Pfam Gelsolin repeat 28 111 IPR007123 -
Prci4g1418 962 FunFam Villin-like 1 613 734 - -
Prci4g1418 962 CDD gelsolin_S6_like 621 718 - -
Prci4g1418 962 SMART VILL_6 19 117 IPR007122 GO:0051015
Prci4g1418 962 SMART VILL_6 622 719 IPR007122 GO:0051015
Prci4g1418 962 SMART VILL_6 252 344 IPR007122 GO:0051015
Prci4g1418 962 SMART VILL_6 392 489 IPR007122 GO:0051015
Prci4g1418 962 SMART VILL_6 519 606 IPR007122 GO:0051015
Prci4g1418 962 SMART VILL_6 137 234 IPR007122 GO:0051015
Prci4g1418 962 FunFam Gelsolin 520 612 - -
Prci4g1418 962 Gene3D Severin 521 613 IPR029006 -
Prci4g1418 962 Gene3D Severin 133 247 IPR029006 -
Prci4g1418 962 Gene3D Severin 248 357 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g1418 Prci-Chr4 11481778 11494677 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g1418 - - gmx:100808499 1627.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g1418 4 11481778 11494677 Prci9g1169 9 25738602 25740753 CCT
Prci9g0937 9 23981438 23993066 Prci4g1418 4 11481778 11494677 CCT
Prci4g1418 4 11481778 11494677 Prci4g1418 4 11481778 11494677 ECH