Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3756 ATGGCACACGCTCCACAAACCCTTGTGGCCACCGAATCCGAGCCTGATGAAACTCCTCCAGGCACTCTTTCTCCTCCCGCCCCAAACCCTACTTCTCCCAACCGCGTGATGAATCCAGATTCCACCCGAATTCCGACCCTCCTCCATATTTCCTTCAATCAGGATTCCGGCTGCTTTGCCGCGGGCACGGACCGTGGCTTCCGGATCTACAATTGCGATCCATTCCGCGAGATCTTTCGGCGGGACTTTGGTGCAGGTGGTGGAATAGGTTTAGTTCAGATGTTGTTTCGTTGCAACATACTTGCCTTTGTCGGTGGCGGAGCTGACCCTATTTACCCAAATAACAAAGTCATGATTTGGGATGATCATCAGTCCCGGTGCATTGGCGAGCTATCGTTTCGATCCGAGGTCAAAGGGGTTCGTCTTAGAAGGGATCGAATTGTGGTGGTTCTGGTGCATAAGATATTCGTATATAATTTCGCAGATCTTAAAGTGTTGCACCAAATTGAGACAACGGCGAATCCAAAGGGACTTTGTGAGGTTTCACATGTTTCAGGGACAATGGTGTTAGTCTGTCCAGGGTTGCAGAAGGGTCAGGTGAGGGTCGAGCATTACGCCTCAAAGCGGACCAAGTTTATAATGGCGCACGATTCTAGAATAGCTTGCTTCGCGCTTTCGCAGGACGGGCGGTTGCTTGCCACTGCGAGCAGCAAGGGAACTCTGGTCAGGATTTTCAATACATTGGACGGTTCGTTGCTCCAAGAGGTAAGGAGGGGTGCAGATCGAGCAGAGATATATAGCCTTGCCTTTTCTGCTACTGCACAGTGGCTAGCTGTCTCAAGTGACAAAGGAACTGTTCATGTCTTCAACTTGAAGGTTGATTCAGGACTATTGGGGCATGAGAGAGTGCAGAGTGCATCGGAAACTAATCCTGCTAACCCATCAGCAGTTTCATCTCTTTCTTTTATAAAAGGTGTTCTGCCCAAGTATTTTAGCTCAGAATGGTCTGTGGCGCAGTTTCGCTTGCATGAAGGTTTGCAATATATTGTTGCCTTTGGCCATCAGAAGAACACAATCGTAATACTTGGGATGGATGGAAGCTTCTATCGATGCCAGTTTGATCCGGTGAATGGTGGAGAGATGAGCCAAGTTGAATATTATAACTTCTTGAAGCCAGGGGAGATATTCTAG 1191 0.4853 MAHAPQTLVATESEPDETPPGTLSPPAPNPTSPNRVMNPDSTRIPTLLHISFNQDSGCFAAGTDRGFRIYNCDPFREIFRRDFGAGGGIGLVQMLFRCNILAFVGGGADPIYPNNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLVHKIFVYNFADLKVLHQIETTANPKGLCEVSHVSGTMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALSQDGRLLATASSKGTLVRIFNTLDGSLLQEVRRGADRAEIYSLAFSATAQWLAVSSDKGTVHVFNLKVDSGLLGHERVQSASETNPANPSAVSSLSFIKGVLPKYFSSEWSVAQFRLHEGLQYIVAFGHQKNTIVILGMDGSFYRCQFDPVNGGEMSQVEYYNFLKPGEIF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3756 396 SUPERFAMILY WD40 repeat-like 45 322 IPR036322 GO:0005515
Prci3g3756 396 MobiDBLite consensus disorder prediction 19 33 - -
Prci3g3756 396 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 45 389 - -
Prci3g3756 396 SMART WD40_4 30 71 IPR001680 GO:0005515
Prci3g3756 396 SMART WD40_4 249 290 IPR001680 GO:0005515
Prci3g3756 396 SMART WD40_4 206 246 IPR001680 GO:0005515
Prci3g3756 396 Pfam WD domain, G-beta repeat 259 290 IPR001680 GO:0005515
Prci3g3756 396 Pfam WD domain, G-beta repeat 215 241 IPR001680 GO:0005515
Prci3g3756 396 FunFam Autophagy-related protein 18a isoform A 45 375 - -
Prci3g3756 396 Gene3D - 42 376 IPR015943 GO:0005515
Prci3g3756 396 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3756 Prci-Chr3 46558581 46562938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3756 K22991 - qsa:O6P43_007499 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2302 1 43512364 43515810 Prci3g3756 3 46558581 46562938 CCT
Prci3g3756 3 46558581 46562938 Prci3g3756 3 46558581 46562938 ECH
Prci1g4018 1 55449526 55454569 Prci3g3756 3 46558581 46562938 ECH