Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3492 ATGACTTTCTCCCTCTTCTTCGTCTTCCTCTTTGCCCTCTGTTCTGCTTCTCATGCCTTCCCACCCCACAACCACCATCGTCGTTCTGCCTCTCACAATTACACAGACGCCCTCTCCAAATCCGTCCTCTTTTTCGAAGGTCAGAGGTCCGGTAAGCTCCCTCCCGCCCAGAGGATGACATGGAGAGGGGACTCTGCTCTCTCAGACGGCTCTGCAATGCATGTTGATTTGGTGGGAGGGTACTACGATGCAGGGGACAATGTCAAGTTCGGTTTTCCCATGGCATTCACAACCACCATGCTTTCCTGGAGTGTTATTGAGTTTGGTGGGCTCATGAAAGGGGAATTGCAGAATGCTAGAGAAGCGATTCGTTGGGCTACCGATTACCTCCTTAAGGCTACTGAACATCCAGACATCGTTTTTGTTCAGGTGGGAGATGCGAGGAGTGATCACGCTTGTTGGGAGAGGCCGGAGGACATGGATACCCCAAGAAATGTGTACAAGATCGATGAGAACAACCCTGGTTCAGAAGTGGCGGCTGAAACTGCAGCCGCTCTAGCAGCTGCTTCTCTGGTTTTCAAAAAAAGTGACCCAGCTTACTCCAAAACTCTAGTCACTAGGGCTACAAGGGTGTTTGAGTTTGCTGATAAATACAGGGGATCCTACAGCGATGGGCTGAAGCCCATTGTATGCCCTTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTATGGGGTGCTGCTTGGCTGCACAAGGCTACTCGGAAGCCCATGTACCTCGACTATATTCAAGCGAACGGGCAGTCACTTGGGGCTGCAGAGATTGATAACATGTTTGGGTGGGATAACAAGCACGTTGGGGCAAGGATGCTTCTTTCCAAGGAGTTCCTGGTTCAGAAAGTAGAATCGCTCCATGACTACAAGGGTCACGCAGACAATTTCATATGTTCCATAATTCCCGGCACCTCTTTCTCGTCGTCCCAATATACCCCGGGTGGGCTTTTATTCAAGATGAGTGACAGCAACATGCAGTATGTGACGTCCACTTCCTTCCTGCTCTTGACCTATGCCAAATACTTGACCTCTGCCCACATGTCTGTCAACTGTGGTGGAATCACCGTCACCCCAAAGACTCTTCGTACTATGGCCAGGAAACAGGTTGATTACTTGCTGGGAGATAACCCCCTAAAGATGTCATACATGGTGGGGTACGGTCCAAATTACCCGCGAAGGATACACCACAGGGGCTCATCTCTACCGTCCATTGCAGCGCACCCTGGTAAGATCCAGTGCTCCGCAGGCTTCACTGCCATGAATTCACAGACCCCCAATCCGAACGTACTGGTGGGCGCAGTGGTGGGTGGACCGGACCTGCATGATAGCTTTCCAGATGAACGGTCAGATTATGAGCAGTCAGAACCAGCCACTTATACTAACGCGCCGCTTGTAGGTGCCCTGGCTTATCTGGCTCACTCATTCGGCCAACTATAG 1494 0.5094 MTFSLFFVFLFALCSASHAFPPHNHHRRSASHNYTDALSKSVLFFEGQRSGKLPPAQRMTWRGDSALSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNAREAIRWATDYLLKATEHPDIVFVQVGDARSDHACWERPEDMDTPRNVYKIDENNPGSEVAAETAAALAAASLVFKKSDPAYSKTLVTRATRVFEFADKYRGSYSDGLKPIVCPFYCSYSGYQDELLWGAAWLHKATRKPMYLDYIQANGQSLGAAEIDNMFGWDNKHVGARMLLSKEFLVQKVESLHDYKGHADNFICSIIPGTSFSSSQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAHMSVNCGGITVTPKTLRTMARKQVDYLLGDNPLKMSYMVGYGPNYPRRIHHRGSSLPSIAAHPGKIQCSAGFTAMNSQTPNPNVLVGAVVGGPDLHDSFPDERSDYEQSEPATYTNAPLVGALAYLAHSFGQL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3492 497 FunFam Endoglucanase 30 495 - -
Prci3g3492 497 SUPERFAMILY Six-hairpin glycosidases 31 495 IPR008928 GO:0005975
Prci3g3492 497 PANTHER ENDO-1,4-BETA-GLUCANASE 8 492 - -
Prci3g3492 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 390 416 IPR018221 -
Prci3g3492 497 Gene3D - 28 497 IPR012341 GO:0005975
Prci3g3492 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 463 481 IPR033126 -
Prci3g3492 497 Pfam Glycosyl hydrolase family 9 34 487 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3492 Prci-Chr3 44888802 44891651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3492 1 493 Glycoside Hydrolase AT1G02800 74.696 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3492 K01179 - gmx:100777718 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4071 1 55772779 55775515 Prci3g3492 3 44888802 44891651 CCT
Prci3g3492 3 44888802 44891651 Prci3g3492 3 44888802 44891651 ECH