Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g4071 ATGCCTCTCTTCCTTCCCTCCCCTGCTCTTCTGCTCCTTCTTACCCTCTTCTCCGCCACTCTGCTTCCCTGCCGTGCCGTCCCTCTCCGCCACAATCACCCTCCTCGCCACCTCCACCACCCTCATCTTGCCACTCACAACTACAGAGATGCTCTCTCCAAATCCATTCTCTTTTTTGAAGGTCAGAGATCAGGGAGGCTCCCTCCCAACCAGAGGATGACCTGGAGGAGAGACTCTGCTCTCTCAGATGGCTCTGCCCTTCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTCAAGTTCGGTCTTCCCATGGCATTCACCACTACCATGCTTTCCTGGAGCGTGATTGAGTTCGGTGGTCTCATGAAAGCTGAATTGCAGAATGCCAGAGAGGCCATTCGCTGGGCTACCGATTATCTTCTCAAAGCCACTGCACATCCAGACACCATCTATGTTCAGGTGGGAGATGCGAAGAAGGACCATGCCTGTTGGGAGAGACCTGAAGATATGGATACCCCAAGAAATGTGTACAAGATTGACAGGAACACCCCAGGTTCAGAAGTGGCCGCTGAAACTGCCGCTGCTCTTGCGGCTGCTTCTCTGGTTTTCAGAAGAAGCGACCCCATGTACTCTAAAACTTTAATCAGAAGAGCTATTAGGGTGTTCCAGTTCGCTGATAGATACAGGGGATCCTACAGCAACGGCTTGAAGCCCATCGTGTGCCCGTTCTACTGTTCTTATTCTGGCTATCAGGATGAGCTATTGTGGGGCGCTGCTTGGCTGCACAAGGCGACGAAGAACCCAATGTACCTGCATTACATACAAGTTAATGGACAAACCCTTGGGGCCGCAGAGTTCGACAATACCTTTGGGTGGGATAACAAGCATGCCGGAGCCAGGATACTTCTAACTAAGGAATTTCTTCTTGAAAGGGTGCAATCCCTCCATGAATACAAGGGTCATGCGGACAATTTCATCTGCTCTCTCATTCCCGGAGCTTCTTTCTCTTCAACCCAATACACTCCTGGTGGACTTCTGTTCAAGATGAGTGATAGCAACATGCAGTATGTGACATCCTCTTCTTTCTTACTCTTAACCTATGCCAAATACTTGACCTCATCCCACATGGTCGTTAACTGTGGCGGAGCCGCCATGACCCCCAAGAGGCTCCGATCAATTGCCAAGAAACAGGTGGATTACTTGCTGGGAGACAACCCGTTGAAGATGTCATACATGGTAGGATATGGTCCAAGGTACCCAAGAAGGATTCACCACAGGGGATCGTCTCTACCGTCAATTGCTGTACATCCGGGGAAAATCCAATGCTCGGCAGGGTTCAGTGTGATGAAGTCGCAATCCCCAAATCCAAACATCCTGGTGGGAGCCGTCGTGGGTGGGCCCGACCTCCATGACAGGTTCCCAGACGAGCGGTCAGATTATGAGCAATCAGAGCCAGCCACATACATCAACGCCCCACTGGTGGGAGCACTGGCTTATCTTGCTCACTCATTTGGCCAGCTCTAG 1536 0.5117 MPLFLPSPALLLLLTLFSATLLPCRAVPLRHNHPPRHLHHPHLATHNYRDALSKSILFFEGQRSGRLPPNQRMTWRRDSALSDGSALHVDLVGGYYDAGDNVKFGLPMAFTTTMLSWSVIEFGGLMKAELQNAREAIRWATDYLLKATAHPDTIYVQVGDAKKDHACWERPEDMDTPRNVYKIDRNTPGSEVAAETAAALAAASLVFRRSDPMYSKTLIRRAIRVFQFADRYRGSYSNGLKPIVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLHYIQVNGQTLGAAEFDNTFGWDNKHAGARILLTKEFLLERVQSLHEYKGHADNFICSLIPGASFSSTQYTPGGLLFKMSDSNMQYVTSSSFLLLTYAKYLTSSHMVVNCGGAAMTPKRLRSIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMKSQSPNPNILVGAVVGGPDLHDRFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g4071 511 FunFam Endoglucanase 44 509 - -
Prci1g4071 511 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 404 430 IPR018221 -
Prci1g4071 511 PANTHER ENDO-1,4-BETA-GLUCANASE 25 506 - -
Prci1g4071 511 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 477 495 IPR033126 -
Prci1g4071 511 SUPERFAMILY Six-hairpin glycosidases 45 509 IPR008928 GO:0005975
Prci1g4071 511 Pfam Glycosyl hydrolase family 9 48 501 IPR001701 GO:0004553|GO:0005975
Prci1g4071 511 Gene3D - 43 511 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g4071 Prci-Chr1 55772779 55775515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g4071 1 507 Glycoside Hydrolase AT1G02800 74.951 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g4071 K01179 - gmx:100789144 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4071 1 55772779 55775515 Prci3g3492 3 44888802 44891651 CCT
Prci1g4071 1 55772779 55775515 Prci1g4071 1 55772779 55775515 ECH