Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2972 ATGGCTCTCTTTCTCCTGGCAATATTAATAGTGATGGTCCCTTCAGGCCATGCCTCGTGGCCACCTTCACCGGGCTACTGGCCAAGCTCTAGATTCAGGTCCATGAGCTTCTACGAAGGATTTAGAAACCTCTGGGGTCCTCAGCACCAGAGACTAGACCAAAACACATTAACAATTTGGCTCGACAGAACCTCAGGAAGTGGGTTTAAGTCAGTTCGTCCCTTCCGGTCCGGATACTTCGGTGCTTCTATTAAACTCCAACCGGGCTATACTGCAGGAGTCATCACGGCTTTCTACCTTTCGAACAACGAAGCACATCCTGGCTTCCACGATGAAGTAGACATAGAGTTTCTCGGGACAACATTTGGGAAGCCTTATACTCTGCAGACGAATGTGTACATAAGAGGGAGTGGTGATGGCAAAATCATAGGCAGGGAAATGAAGTTCCATCTCTGGTTTGATCCCACCAAAGATTTTCATAACTACGCTATACTCTGGAGTCCTAAGGAAATAATATTCCTAGTGGATGATGTGCCGATAAGGAGGTACCAGAAGAAGAGCGATGCCACATATCCGGTGAGGCCAATGTGGGTGTATGGTTCGATCTGGGACGCATCATCATGGGCAACCGAAGATGGAAAGTACAAAGCAGATTACAGATACCAGCCATTCGTGGCCAAGTACAGCAACTTTAAGGCCAGCGGTTGCTCAGCCTATGGGCCGATTTGGTGCCGCCCGGTCTCGGTTTCGCCGTACAGGTCCGGTGGGTTGAGCGGCCAGCAATACAGGGCCATGAGATGGGTTCAAAGATACCGTATGGTTTATAATTATTGCAATGACCCCAAAAGAGATCACAGGCTAACACCGGAGTGTTGGGGCTGA 882 0.4921 MALFLLAILIVMVPSGHASWPPSPGYWPSSRFRSMSFYEGFRNLWGPQHQRLDQNTLTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKDFHNYAILWSPKEIIFLVDDVPIRRYQKKSDATYPVRPMWVYGSIWDASSWATEDGKYKADYRYQPFVAKYSNFKASGCSAYGPIWCRPVSVSPYRSGGLSGQQYRAMRWVQRYRMVYNYCNDPKRDHRLTPECWG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2972 293 Gene3D - 17 291 - -
Prci3g2972 293 Pfam Glycosyl hydrolases family 16 39 220 IPR000757 GO:0004553|GO:0005975
Prci3g2972 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 228 IPR000757 GO:0004553|GO:0005975
Prci3g2972 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 278 IPR013320 -
Prci3g2972 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 291 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Prci3g2972 293 PIRSF EndGlu_transf 2 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Prci3g2972 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 34 291 IPR044791 GO:0004553
Prci3g2972 293 FunFam Xyloglucan endotransglucosylase/hydrolase 24 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2972 Prci-Chr3 41381280 41383028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2972 1 291 Glycoside Hydrolase AT3G44990 66.667 3.50e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2972 K08235 - gmx:100796698 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2826 1 47039134 47043167 Prci3g2972 3 41381280 41383028 CCT
Prci3g2972 3 41381280 41383028 Prci3g2972 3 41381280 41383028 ECH