Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2826 ATGGCTCTCCTTCTCTTTATTATTTTAATCTTTATGATCCCTTCAAGCAATGCCTATGGGCCGCCACCTTCACCTGGCTACTGGCCAAGCTCCCAATTCAGGTCTATGAGCTTTTACAAAGGATTTAGAAGCCTCTGGGGTCCTCAGCACCAAAGACTACAAAAAAATGAATTAAGAATATGGCTTGATAGAACCTCAGGCAGTGGCTTCAAGTCTATTCGCCCATTCCGTTCTGGTTACTTTGGTGCTTCCATTAAGCTCCAACCTGGCTATACTGCAGGCGTTATAACATCCCTTTATCTTTCAAACAATGAAGCACATCCGGGCTTCCATGATGAGGTGGACATTGAGTTTCTGGGGACAACATTTGGAAAGCCTTATACTTTGCAGACCAATGTTTATATAAGAGGAAGTGGGGATCGTAAGATTATAGGCAGGGAGATGAAATTCCATCTCTGGTTTGATCCTACCAAAGATTTTCATCACTATGCTATACTATGGAGTCCCAAGGAAATAATATTCTTTGTGGATGATGTGCCCATAAGGAGGTACCCGAGGAAGAGTGCGGCAACTTTTCCAGTGAGGCCAATGTGGCTTTATGGTTCAATATGGGACGCTTCATCATGGGCAACAGAAGATGGCAAGTACAAAGCTGATTACAGATACCAGCCTTTTGTTGCAAGGTACACCAAATTTAAGGCTAGTGGCTGCTCAGCCTATGCCCCAGCCAGGTGCCACCCTGTCTCCGCCTCGCCGTATCGCGCCGGTGGCCTTACAAGACAACAATGCCAGGCCATGAGATGGGTGCAGAGATACCACATGGTTTACAATTATTGCCAGGATCCCAAAAGAGACCACAGTCTAACCCCAGAATGCTGGCGTTCTTACTGA 891 0.459 MALLLFIILIFMIPSSNAYGPPPSPGYWPSSQFRSMSFYKGFRSLWGPQHQRLQKNELRIWLDRTSGSGFKSIRPFRSGYFGASIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDRKIIGREMKFHLWFDPTKDFHHYAILWSPKEIIFFVDDVPIRRYPRKSAATFPVRPMWLYGSIWDASSWATEDGKYKADYRYQPFVARYTKFKASGCSAYAPARCHPVSASPYRAGGLTRQQCQAMRWVQRYHMVYNYCQDPKRDHSLTPECWRSY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2826 296 Gene3D - 19 292 - -
Prci1g2826 296 Pfam Glycosyl hydrolases family 16 40 221 IPR000757 GO:0004553|GO:0005975
Prci1g2826 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 60 280 IPR013320 -
Prci1g2826 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 35 292 IPR044791 GO:0004553
Prci1g2826 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 256 292 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Prci1g2826 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 229 IPR000757 GO:0004553|GO:0005975
Prci1g2826 296 PIRSF EndGlu_transf 4 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Prci1g2826 296 FunFam Xyloglucan endotransglucosylase/hydrolase 25 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2826 Prci-Chr1 47039134 47043167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2826 1 292 Glycoside Hydrolase AT3G44990 66.894 1.17e-146 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2826 K08235 - gmx:100796698 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2826 1 47039134 47043167 Prci3g2972 3 41381280 41383028 CCT
Prci1g2826 1 47039134 47043167 Prci1g2826 1 47039134 47043167 ECH