Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2938 ATGCGGTGTTTTCTTTCGTTGGTATTGGCCTTAGCTTCCTTCCTGTTGCTGGTAGCGGTAGCATACAGCGGACTGCCGAGGAGTTTTCTGCCTCTTGAGCGGGCCTTTCCTCCGGGCCATCGAGTGGAACTGGAAGCACTCAGAGCACGTGACAGAGCCAGGCATGCTCGAATCTTGAAAGGCGTGGTAGGCGGTGTTGTCGACTTCTCAGTCGAAGGGACCTCCGATCCTTACTCCATTGGGTACGGGCTGTACTTTACGAAAGTGAAGCTGGGCTCTCCTCCAAGAGAATTTAAAGTCCAGATTGATACTGGAAGTGACATATTGTGGGTTGCTTGCGATGCTTGCAGCGATTGCCCTCGATCTAGTGACCTTGGGATTGAGCTCAATTTCTTTGATAGAGCCAGCTCATCCACAGCCATGCTAGTTTCCTGCTCAGACCAAATGTGTGCTTCTGCGTTGCAAAGTACTGGAACTGAATGTTCCCCTCAGATTAATCAGTGCAGCTACACTTTCCAGTATGGAGATGGAAGTGGGACATCAGGTTATTACGTATCTGATCTGATGCATTTTGACGTGATGCTAGGACAGTCTATGCCTGCCAACACTTCAGCTAATGTTGTTTTCGGGTGTAGCACCTCTCAATCAGGAGAATTGACAAAGACGGATAAAGCTGTTGATGGAATTTTTGGTTTTGGCCCTGGTGGTTTATCTGTTATCTCACAATTGTCATCACGGGGAGTAACACCCAGAGTCTTCTCTCATTGCCTAAAAGGAGAAGGCAATGGAGGAGGCATATTAGTTCTTGGTGAGATTTTGGAGCCAAATATTGTTTATAGTCCACTCGTCCCATCACAGCCCCATTACAACTTAAACCTTCAGAGCATTGCTGTCAATGAACAACTCCTCCCAATTGATTCAGCTGTCTTTGCAACATTTAAGAACCAAGGAACTATAGTTGACTCTGGTACAACGTTGGCATACTTTGTTCAAGAAGCATATGATCCTATTATTAATGCTATCACTACTGCTGTGTCACATTCTGCAAATCCCATTATTTCAAAAGGATATCAGTGTTATCTGGTCTCAAGCAGCATAGGTGATATATTTCCTCCAGTAAGTTTAAATTTTGCTGGCGGGGCATCCATGGTTTTAAAACCTGAACAGTACCTTATTCGTTATGGATTCGTCGATGGTTCTGCAATGTGGTGTATTGGTTTCCAGAAGGCGCAGGATGGGGTTACAATTTTAGGAGATGTTGTCCTAAAAGATAAGATTTTTGTCTATGACTTGGCTCATCAACGAATTGGGTGGACTAACTATGATTGTTCCTTGTCTGTAAATGTCTCCCTGACCACAAGCAAGGATGAGTACATCAATGCAAGGAAGCGGGGTGCAAGTAGCTCACAGATGGACACTCTCAAGAATTTGCTACCTGTTAGCATCGGCATTCTCATAGCGTACATATTAGTTTTCATGGAGTCCCTATAG 1491 0.4487 MRCFLSLVLALASFLLLVAVAYSGLPRSFLPLERAFPPGHRVELEALRARDRARHARILKGVVGGVVDFSVEGTSDPYSIGYGLYFTKVKLGSPPREFKVQIDTGSDILWVACDACSDCPRSSDLGIELNFFDRASSSTAMLVSCSDQMCASALQSTGTECSPQINQCSYTFQYGDGSGTSGYYVSDLMHFDVMLGQSMPANTSANVVFGCSTSQSGELTKTDKAVDGIFGFGPGGLSVISQLSSRGVTPRVFSHCLKGEGNGGGILVLGEILEPNIVYSPLVPSQPHYNLNLQSIAVNEQLLPIDSAVFATFKNQGTIVDSGTTLAYFVQEAYDPIINAITTAVSHSANPIISKGYQCYLVSSSIGDIFPPVSLNFAGGASMVLKPEQYLIRYGFVDGSAMWCIGFQKAQDGVTILGDVVLKDKIFVYDLAHQRIGWTNYDCSLSVNVSLTTSKDEYINARKRGASSSQMDTLKNLLPVSIGILIAYILVFMESL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2938 496 FunFam Aspartic proteinase-like protein 2 272 450 - -
Prci3g2938 496 CDD pepsin_A_like_plant 85 443 IPR034161 -
Prci3g2938 496 Gene3D Acid Proteases 272 449 IPR021109 -
Prci3g2938 496 Pfam Xylanase inhibitor C-terminal 288 439 IPR032799 -
Prci3g2938 496 ProSiteProfiles Peptidase family A1 domain profile. 85 439 IPR033121 -
Prci3g2938 496 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Prci3g2938 496 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Prci3g2938 496 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Prci3g2938 496 SUPERFAMILY Acid proteases 80 446 IPR021109 -
Prci3g2938 496 PANTHER ASPARTYL PROTEASES 19 437 IPR001461 GO:0004190|GO:0006508
Prci3g2938 496 Gene3D Acid Proteases 69 271 IPR021109 -
Prci3g2938 496 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
Prci3g2938 496 FunFam Aspartic proteinase-like protein 2 66 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2938 Prci-Chr3 41002520 41007568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2938 83 444 Miscellaneous Gene Families AT1G44130 28.646 1.33e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2938 - - qsa:O6P43_006583 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2883 1 47541874 47547065 Prci3g2938 3 41002520 41007568 CCT
Prci3g2938 3 41002520 41007568 Prci3g2938 3 41002520 41007568 ECH