Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2883 ATGCGGAGTTCTCTTCCGATGTTACTGGCTTTAGCCACTTTTTTGGTGCCGGTATCGGTGGTTCACGGTGGGTTGTCTGGGGGTTTCCTCCCTCTGGAACGAGCAATTCCTCTTAGCCTGCGAGTGGAGCTGCAAGCACTCAGAGCTCGCGACCAAGCTCGGAATGCTCGAATCTTGCAAGGTGCAGTAGGTGGTGTTGTTGACTTCTCAGTCAAAGGGATCTCTGATCCTTCCAGTATTGGGCTGTATTATACAAAAGTGAAGCTGGGCTCTCCTCCAAAAGAATTCAACGTCCAGATTGATACCGGAAGCGACATCTTATGGGTTAATTGCAATACTTGCGGTGATTGCCCTCAATCTAGTCAATTGGAGATTCAGCTCAATTTCTTTGATACAGCCAGCTCATCCACATCTGCGCTGATTTCCTGCTCAGACCCAATATGCATTTCTTCAACTCAAAGTGCCGCAACTGAATGCACCCCTCAGATTAATCAGTGCGGCTACACTTTTCAGTATGGAGATGGAAGCGGGACATCGGGGTATTATGTTTCTGACGCGATGTATTTTGACACGATCCTTGGGCAGTCTATGCTGGCTAATTCTTCTACTAAAGTTGTTTTTGGGTGTAGTACCTATCAGTCTGGAGATTTGACTAAGACAGATAAAGCGGTGGATGGAATTTTTGGGTTTGGTCCGGGTGCTCTATCCGTTATTTCGCAATTATCATCACGAGGCATTACTCCCAAAGTATTTTCTCATTGTTTAAGAGGAGAGGGTAATGGAGGAGGCATACTAGTTCTCGGTGAGATTTTGGAGCCAAGTCTTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGGTGTTAATGGACGAATTCTCCCTATTAATCCAGCAGTTTTTGCAACATCTAATAACCGAGGAACTATAGTTGATACGGGTACAACCTTGGCATACCTTGTTCAAGAAGCATACGATCCTTTAGTCAATGCTATAACTACCATTGTTTCACAGTCTGCCACTCCCATCATTTCAAGAGGAAGCCAGTGTTATTTGGTCTCAACCAGTGTAGGTGATATATTTCCTGCAGTCAGTTTGATCTTTGCTGGTGGAGCATCCATGGTTTTAAAACCAGAGCAGTACCTTATACGTACCGATTTCATTGATGGTGTTCCAGAGTGGTGTATTGGTTTCCAGAAGGTGCAGGAGGGAGTTTCAATTTTGGGAGATCTTGTCCTAAAAGATAAGATATTTGTCTACGACTTAGCTCATCAACGAATTGGATGGGCTAACTATGATTGTTCTCTGTCTGTGAATGTCTCTGTGACCACAACAAAGGATGAGTACGTTAGAGCGGGACAGCTGAGTGTGAGCAGCTCAGAGTCAGACATTCTCGCCAAGTTGCTCCCTTTAAGCATTGCAGCTTTCTTTGTGCATGTGGTACTTTTCTGGGAGTCCCAATTTTTGTAA 1491 0.4453 MRSSLPMLLALATFLVPVSVVHGGLSGGFLPLERAIPLSLRVELQALRARDQARNARILQGAVGGVVDFSVKGISDPSSIGLYYTKVKLGSPPKEFNVQIDTGSDILWVNCNTCGDCPQSSQLEIQLNFFDTASSSTSALISCSDPICISSTQSAATECTPQINQCGYTFQYGDGSGTSGYYVSDAMYFDTILGQSMLANSSTKVVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGITPKVFSHCLRGEGNGGGILVLGEILEPSLVYSPLVPSQPHYNLNLQSIGVNGRILPINPAVFATSNNRGTIVDTGTTLAYLVQEAYDPLVNAITTIVSQSATPIISRGSQCYLVSTSVGDIFPAVSLIFAGGASMVLKPEQYLIRTDFIDGVPEWCIGFQKVQEGVSILGDLVLKDKIFVYDLAHQRIGWANYDCSLSVNVSVTTTKDEYVRAGQLSVSSSESDILAKLLPLSIAAFFVHVVLFWESQFL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2883 496 ProSiteProfiles Peptidase family A1 domain profile. 83 437 IPR033121 -
Prci1g2883 496 Gene3D Acid Proteases 270 448 IPR021109 -
Prci1g2883 496 FunFam Aspartic proteinase-like protein 2 270 448 - -
Prci1g2883 496 CDD pepsin_A_like_plant 83 441 IPR034161 -
Prci1g2883 496 Pfam Xylanase inhibitor C-terminal 286 437 IPR032799 -
Prci1g2883 496 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Prci1g2883 496 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Prci1g2883 496 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Prci1g2883 496 SUPERFAMILY Acid proteases 80 444 IPR021109 -
Prci1g2883 496 PANTHER ASPARTYL PROTEASES 26 435 IPR001461 GO:0004190|GO:0006508
Prci1g2883 496 Gene3D Acid Proteases 68 269 IPR021109 -
Prci1g2883 496 FunFam Aspartic proteinase-like protein 2 66 269 - -
Prci1g2883 496 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2883 Prci-Chr1 47541874 47547065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g2883 80 442 Miscellaneous Gene Families AT1G44130 27.749 8.99e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2883 - - qsa:O6P43_006583 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2883 1 47541874 47547065 Prci3g2938 3 41002520 41007568 CCT
Prci1g2883 1 47541874 47547065 Prci1g2883 1 47541874 47547065 ECH