Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g2582 ATGGCCGTCCAAAAGCATGTCTTATCGTTCTTCATCATAATTTCTTTTGTTGGTCGTTATAGCACTTTGCAAGAGGACCCACACAACGCATATTTTGATGATTCACCTAATACGATCAATGGTGGTGGTGGGACATTCGAGAACTTGCTCAGGCAAAGCCCAGATGTTTTGAGGTTGAACAGATTTGATCAGTTGGTTGGTCCTTCTCTCTCGCCTAACAAAGTGAATGTCAATGATTACGGAGCTATAGGGGATGGTACTACTGACGACACACAGGCATTCAAGAAGGCTTGGAAGGTTGCATGCTCTTCTGGAGAAGCAGTTTCTCTCGTGGTGCCTCGGCAGAATTATCTACTCAAGCCAATAGGATTCTCTGGGCCATGCAAATCTGCCATTACGGTGAAGATCTCTGGAGTGCTTGAAGCGTCTGATAATCCTTCAGACTACAGTCATGATCCCACACATTGGCTTGAGTTTAAGTTTGTCCAGAGTCTATCAGTCGAAGGTGATGGTACCATCAATGGAAAGGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACAAGAAACTCCCTTGCAAGAATGCCCCTACGGCTCTGACGTTCTATATGTGTAAGAATTTGGTGGTTAAGAACCTGACGATAAAGAATGCACAGAAAATGCACGTATCGTTCCAGGACTCCTCATACGTTAGAGCTTCGGGTCTCACTGTGACTGCACCAGAGGGTAGTCCTAACACAGATGGAATTCATATCACCAACACACAAAACATCCAAATCTCAAGCTCTGTCATAAGAACTGGAGATGATTGCATATCAATAGTAAGCGGATCTCAGGATGTACAAGCTACCGATATAACCTGCGGACCGGGCCATGGTATCAGCATTGGAAGCTTAGGGGCCAAACAAACCGAAGCTTTTGTTTCTGGCATAACAGTAAATGGGGCTAAGTTATCTGGAACCACAAATGGAGTCAGAATTAAGACATGGCAGGGTGGGTCGGGAAGTGCAAGCAACATCAAGTTCCAGAACATAGAGATGAACAATGTGACCAACCCCATAATAATAAACCAGAACTACTGTGACCAGAAGGTTCCATGCAAACAGCAGTACTCAGCGGTTCAAATCAAGGATGTGTTATACCGGAACATAAAAGGTACAAGTGCTTCAGAAGTAGGAGTGACGTTTGATTGCAGCGAGATCTTTCCGTGCGAAGGGATTGTAATGCAGAACGTTGACTTGAAACTAGAATCAGGAGAAGCTTCCAAGGCTTCATGCGACAATGTTCAAGTGTCCCACATCGGACACGTAAGCCCTCTCTGCCCACAAGCATGA 1335 0.4494 MAVQKHVLSFFIIISFVGRYSTLQEDPHNAYFDDSPNTINGGGGTFENLLRQSPDVLRLNRFDQLVGPSLSPNKVNVNDYGAIGDGTTDDTQAFKKAWKVACSSGEAVSLVVPRQNYLLKPIGFSGPCKSAITVKISGVLEASDNPSDYSHDPTHWLEFKFVQSLSVEGDGTINGKGNIWWQNSCKRNKKLPCKNAPTALTFYMCKNLVVKNLTIKNAQKMHVSFQDSSYVRASGLTVTAPEGSPNTDGIHITNTQNIQISSSVIRTGDDCISIVSGSQDVQATDITCGPGHGISIGSLGAKQTEAFVSGITVNGAKLSGTTNGVRIKTWQGGSGSASNIKFQNIEMNNVTNPIIINQNYCDQKVPCKQQYSAVQIKDVLYRNIKGTSASEVGVTFDCSEIFPCEGIVMQNVDLKLESGEASKASCDNVQVSHIGHVSPLCPQA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g2582 444 Pfam Glycosyl hydrolases family 28 102 432 IPR000743 GO:0004650|GO:0005975
Prci3g2582 444 Gene3D - 68 439 IPR012334 -
Prci3g2582 444 SUPERFAMILY Pectin lyase-like 68 442 IPR011050 -
Prci3g2582 444 FunFam Polygalacturonase QRT2 64 442 - -
Prci3g2582 444 PANTHER - 74 429 - -
Prci3g2582 444 SMART pbh1 308 329 IPR006626 -
Prci3g2582 444 SMART pbh1 205 254 IPR006626 -
Prci3g2582 444 SMART pbh1 337 358 IPR006626 -
Prci3g2582 444 SMART pbh1 255 276 IPR006626 -
Prci3g2582 444 ProSitePatterns Polygalacturonase active site. 285 298 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g2582 Prci-Chr3 38599718 38602736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g2582 35 441 Glycoside Hydrolase AT2G41850 57.627 7.63e-153 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g2582 K01184 - gmx:100777940 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2582 3 38599718 38602736 Prci1g3273 1 50338304 50341780 CCT
Prci3g2582 3 38599718 38602736 Prci3g2582 3 38599718 38602736 ECH