Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g3273 ATGGCCCTCCAAAAACATAATCTTTCATTCTTAATGTTCTGCATCATCGTCACCATTGTTATTCCTCTTGTCCCTTGTCATGGTACCTCTCAAGAGGACCCGCTAAACAACATCATTGATGGTGGGACATTCAACAACTTGATCCAGCAAAGAACACAAGTTTTGAGGTTAAAAAGGTTTGTTAATTTGGGTGTCACGTCTCTTTCATCAATTTCCAAGTTCAATGTCAATGACTTTGGAGCTAAAGGGGATGGTAAAAGCGATGACACAGAGGCATTCAACAAGGCTTGGCAAGTTGCATGTTCTTCTGGAGGAGACGTAATTCTTGTGGTGCCTTCCGATTATAATTATCTTCTCAAGCCTGTCAGATTCTCAGGTCCCTGCGATTCTAGCATTGCTATCCAGATTTCTGGGACACTTGAAGCATCAGAGAACTCATCGGACTACACTCAAGACCACCAGCACTGGCTTATGTTCGAGAGTCTTCAGAAACTAACAGTCCAAGGAGGTGGAACCGTCAATGGAAATGGAGACACATGGTGGCAAAACTCCTGCAAAACCAACCCAAGTCTCCCTTGCCAGAGCGCTCCAACGGCTGTGACTTTCTATAAGTGTGAGGATCTGATAGTAGAGAACCTGATGATTAAAAACGCACAACAAATCCATGTGAAAATTCAAGAATCCACGGACGTGAAGATTTCTAGTGTTACAGTGAATGCACCAGAGGATAGCCCCAACACTGATGGAATTCACATCACCAACACCAAAAATATCAAAATCTTAAACTCTCTTATAGCCACAGGAGATGATTGTCTGTCAATAGAAAGTGGAACCCAGAACTTACTGGCCACTGGTATAACCTGCGGACCCGGCCATGGTATCAGCATTGGAAACTTAGGGGAGACCGGAACCGAGGAACTTGTGTCGGGAATAACAGTGAATGGAGCTAAGCTTTATGGAACAACAAATGGTGTTAGAATTAAGACGTGGCAAGGAGGGGTAGGAAGTGCAAGCAAGATCAAGTTTCAAAATATTATGATGGAAAATGTGACTAACCCCATAATAATAGACCAGAACTACTGTGACCAGAAGACTCCATGCGAACAAAAGAGCTCTGCGGTTAAGATCAAGAATGTGTTGTACGAGAACATAAAAGGAACGAGTGCTTCTGAAGTTGCAGTGAGCTTGAACTGCAGCCAAAGCTTTCCATGTGAGGGGGTTGTGCTGCAAAACATAGACCTCCAACAAGAAGGAGGACAGATTCCTAAAGCTTCATGTGAAAGTGCTCTCTTGTCCTACGTTGGATCCGTCTCCCCACGTTGCCCATAG 1329 0.4402 MALQKHNLSFLMFCIIVTIVIPLVPCHGTSQEDPLNNIIDGGTFNNLIQQRTQVLRLKRFVNLGVTSLSSISKFNVNDFGAKGDGKSDDTEAFNKAWQVACSSGGDVILVVPSDYNYLLKPVRFSGPCDSSIAIQISGTLEASENSSDYTQDHQHWLMFESLQKLTVQGGGTVNGNGDTWWQNSCKTNPSLPCQSAPTAVTFYKCEDLIVENLMIKNAQQIHVKIQESTDVKISSVTVNAPEDSPNTDGIHITNTKNIKILNSLIATGDDCLSIESGTQNLLATGITCGPGHGISIGNLGETGTEELVSGITVNGAKLYGTTNGVRIKTWQGGVGSASKIKFQNIMMENVTNPIIIDQNYCDQKTPCEQKSSAVKIKNVLYENIKGTSASEVAVSLNCSQSFPCEGVVLQNIDLQQEGGQIPKASCESALLSYVGSVSPRCP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g3273 442 PANTHER - 73 427 - -
Prci1g3273 442 FunFam Polygalacturonase QRT2 62 442 - -
Prci1g3273 442 Pfam Glycosyl hydrolases family 28 101 426 IPR000743 GO:0004650|GO:0005975
Prci1g3273 442 SMART pbh1 337 358 IPR006626 -
Prci1g3273 442 SMART pbh1 228 254 IPR006626 -
Prci1g3273 442 SMART pbh1 255 276 IPR006626 -
Prci1g3273 442 SMART pbh1 308 329 IPR006626 -
Prci1g3273 442 SUPERFAMILY Pectin lyase-like 72 441 IPR011050 -
Prci1g3273 442 Gene3D - 64 437 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g3273 Prci-Chr1 50338304 50341780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g3273 72 441 Glycoside Hydrolase AT3G57510 57.258 3.46e-151 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g3273 K01184 - gmx:100816917 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2582 3 38599718 38602736 Prci1g3273 1 50338304 50341780 CCT
Prci1g3273 1 50338304 50341780 Prci1g3273 1 50338304 50341780 ECH