Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g0376 ATGTGCTCCCTAACCCGCAATGACTTGCGGAGGATCTTTGAGAAGCTGGACGAGAACAGCGATGGTCATGTTAGTCTCGAGAATATAAACAGACTACTGGAGAATACAGGCTTCCACTTTGTAGCAGAGGAGGTTGAGTCTCTTGTGGGGAAGAAGAAACTTGACTTGGACGAGTTCTTGAAGTTTTACGAGTCCATGTCGAGTAGTGGCAATAGCAGAGGGGGTGATGAAGAAGAAGAAGAAGAACTGGTGAAGGCGTTCGAGGTGTTCGACATGGATGGAGATGGATTCATCAGTGGCCAGGAGGTGGAGTGTGTGCTCAAGAGGCTTGGATTGTGGGACCCCAGGAGCTGCAAAGATTGCGCCTCCATGATCTGCCTTTACGACACCAATCTGGATGGCGTGCTTGATTTCCATGAATTTAAGAACATGATGTTGCTTACCATCCCTTAA 453 0.4812 MCSLTRNDLRRIFEKLDENSDGHVSLENINRLLENTGFHFVAEEVESLVGKKKLDLDEFLKFYESMSSSGNSRGGDEEEEEELVKAFEVFDMDGDGFISGQEVECVLKRLGLWDPRSCKDCASMICLYDTNLDGVLDFHEFKNMMLLTIP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g0376 150 ProSitePatterns EF-hand calcium-binding domain. 91 103 IPR018247 -
Prci2g0376 150 SUPERFAMILY EF-hand 7 147 IPR011992 -
Prci2g0376 150 Gene3D - 70 148 - -
Prci2g0376 150 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Prci2g0376 150 SMART efh_1 8 36 IPR002048 GO:0005509
Prci2g0376 150 SMART efh_1 82 110 IPR002048 GO:0005509
Prci2g0376 150 SMART efh_1 120 148 IPR002048 GO:0005509
Prci2g0376 150 FunFam Calmodulin A 3 148 - -
Prci2g0376 150 Pfam EF hand 10 27 IPR002048 GO:0005509
Prci2g0376 150 CDD EFh 83 145 IPR002048 GO:0005509
Prci2g0376 150 ProSiteProfiles EF-hand calcium-binding domain profile. 78 113 IPR002048 GO:0005509
Prci2g0376 150 Gene3D - 5 65 - -
Prci2g0376 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 145 - -
Prci2g0376 150 Pfam EF-hand domain pair 81 145 IPR002048 GO:0005509
Prci2g0376 150 ProSiteProfiles EF-hand calcium-binding domain profile. 116 150 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g0376 Prci-Chr2 2630858 2632640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g0376 2 146 EF-hand Containing Proteins AT1G21550 45.695 9.71e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci2g0376 K13448 - qsa:O6P43_015119 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0376 2 2630858 2632640 Prci15g0417 15 2717307 2718272 CCT
Prci2g0376 2 2630858 2632640 Prci2g0376 2 2630858 2632640 ECH