Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0417 ATGTCTCCCCTTACGCCCACTGACTTGCAGCGAATATTTGAGAAGCTGGATAGGAACGGGGATGGGTTGGTGAGCCTTGAAGAGCTGAAATGGCTGCTGGACAAGATAGGTCACGAGTTCAGCCCCGACGAGCTTGAGGGTCTGGTCGGAAAAAAGAACCTGGACTTGAATGAATTCTTGTTCTTCTGGGAGTCCATATCGAAGCAGAACAATAACAGAGGAGATGAAGAAGGCGAGGACGGAGCAGACGTGGAGAGCGACCTGGCAAAGGCGTTCAGGGTGTTTGACTTGGATGGAGACGGCTTCATCACCAGCCCAGAACTGGAGTGCGTGCTGAAGAGGCTCCACTTACGGGACTGCCCAAGTGCGAAGGACTGCTCCGCCATGATTTGCGCATACGACACCAACTCGGATGGTCGTCTTGACTTCCAGGAGTTCAAGAACATGATGCTCCTTACCTCTTCTTGA 468 0.5256 MSPLTPTDLQRIFEKLDRNGDGLVSLEELKWLLDKIGHEFSPDELEGLVGKKNLDLNEFLFFWESISKQNNNRGDEEGEDGADVESDLAKAFRVFDLDGDGFITSPELECVLKRLHLRDCPSAKDCSAMICAYDTNSDGRLDFQEFKNMMLLTSS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0417 155 Gene3D - 2 152 - -
Prci15g0417 155 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Prci15g0417 155 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Prci15g0417 155 Pfam EF-hand domain pair 86 150 IPR002048 GO:0005509
Prci15g0417 155 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Prci15g0417 155 SUPERFAMILY EF-hand 8 151 IPR011992 -
Prci15g0417 155 Pfam EF hand 8 34 IPR002048 GO:0005509
Prci15g0417 155 ProSiteProfiles EF-hand calcium-binding domain profile. 121 155 IPR002048 GO:0005509
Prci15g0417 155 SMART efh_1 125 153 IPR002048 GO:0005509
Prci15g0417 155 SMART efh_1 87 115 IPR002048 GO:0005509
Prci15g0417 155 SMART efh_1 8 36 IPR002048 GO:0005509
Prci15g0417 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 71 150 - -
Prci15g0417 155 CDD EFh 87 150 IPR002048 GO:0005509
Prci15g0417 155 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Prci15g0417 155 FunFam Probable calcium-binding protein CML44 5 66 - -
Prci15g0417 155 ProSitePatterns EF-hand calcium-binding domain. 134 146 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0417 Prci-Chr15 2717307 2718272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0417 2 151 EF-hand Containing Proteins AT1G21550 48.366 4.78e-41 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0417 K13448 - qsa:O6P43_015119 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0376 2 2630858 2632640 Prci15g0417 15 2717307 2718272 CCT
Prci15g0417 15 2717307 2718272 Prci15g0417 15 2717307 2718272 ECH