Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0385 ATGATTGGCAAGGAGAACTTGATGACGGAGGACTTGAACTTATGCTTTGAGCAACTTATGATGGTTGCAGGCGGTGGTAACAGGGGAAACAGTAGAGCGAAAATGGAAGCCGGGGTGATCACCGAGTGGAAGGATATTCCGGTGGAGCTTTTGATGCAGATTCTGGCCCTTGCTGATAATCGGACGGTGATCGCAGCTTCAGGAGTCTGCCGTGGATGGAGAGATGCTATATGCTTCGCCCTTTCCCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCTTATCGCTTGTGCCTAAATTTACAAAATTGCAAATTTTAGTCCTTCGCCAAGACAAACCTCAACTAGAGGATAATGCAGTTGAGACTATCTCAAATTGCTGTCACGACCTGCAGATGCTAGACCTCAGCAAAAGTTTCAAGCTTACTGATCGCTCTCTGTATGCCTTAGCCCATGGATGCCGTGATCTTACAAATCTAAATATAAGTGGGTGCTCAGCATTTAATGATGTGGCTCTGGCTTACCTAGCCAGTCTCTGCAGGAAATTGAAGTGTTTAAATCTTTGTGGATGTGTTCAAGCAGCATCAGACCCTGCATTACAGGCTTTAGGACGTTACTGCAACCTATTACAATCTTTGAACCTTGGATGGTGTGAAAATGTTGGTGATGATGGAGTGACAAGTTTAGCAGCTGGTTGCCCTGATCTTAGAACACTTGACTTGTGTGGGTGTGTCCGTATAACAGATGAGAGTGTGATTGCTTTGGCAAATGGGTGTCCCCATCTGAGATCCCTTGGGCTGTACTACTGTCAAAATATCACAGACAGAGCAATGTATTCATTGGCCCATAGCAAAGTGAATAACAGGATGTGGGGATCTGTGAAAGGAATTACTGAAGAGGATGGGCTAAGAACTCTCAACATTAGCCAATGCACAGCACTCACACCCTCTGCTGTTCAAGCCGTGTGTGACTCGTTCCCGGCATTGCACACCTGCTCCGGCAGGCATTCACTCATCATGAGTGGCTGCTTGAACCTGACTTCTGTGCACTGTGCTTGTGCTGTGCACTCACATCGAGCGGTCGCCTCTCTCCCATATCAAGCTCATTGA 1119 0.4656 MIGKENLMTEDLNLCFEQLMMVAGGGNRGNSRAKMEAGVITEWKDIPVELLMQILALADNRTVIAASGVCRGWRDAICFALSRLSLSWCSKNMNNLVLSLVPKFTKLQILVLRQDKPQLEDNAVETISNCCHDLQMLDLSKSFKLTDRSLYALAHGCRDLTNLNISGCSAFNDVALAYLASLCRKLKCLNLCGCVQAASDPALQALGRYCNLLQSLNLGWCENVGDDGVTSLAAGCPDLRTLDLCGCVRITDESVIALANGCPHLRSLGLYYCQNITDRAMYSLAHSKVNNRMWGSVKGITEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVHSHRAVASLPYQAH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0385 372 CDD F-box_AtSKP2-like 42 89 - -
Prci15g0385 372 Pfam F-box-like 44 78 IPR001810 GO:0005515
Prci15g0385 372 Gene3D Ribonuclease Inhibitor 78 362 IPR032675 -
Prci15g0385 372 FunFam F-box protein SKP2B 78 296 - -
Prci15g0385 372 Pfam Leucine Rich repeat 262 285 IPR001611 GO:0005515
Prci15g0385 372 Pfam Leucine Rich repeat 210 233 IPR001611 GO:0005515
Prci15g0385 372 Pfam Leucine Rich repeat 236 259 IPR001611 GO:0005515
Prci15g0385 372 SUPERFAMILY RNI-like 77 352 - -
Prci15g0385 372 SUPERFAMILY F-box domain 37 78 IPR036047 GO:0005515
Prci15g0385 372 Gene3D - 42 77 - -
Prci15g0385 372 SMART LRR_CC_2 78 103 IPR006553 -
Prci15g0385 372 SMART LRR_CC_2 236 261 IPR006553 -
Prci15g0385 372 SMART LRR_CC_2 210 235 IPR006553 -
Prci15g0385 372 SMART LRR_CC_2 157 182 IPR006553 -
Prci15g0385 372 SMART LRR_CC_2 131 156 IPR006553 -
Prci15g0385 372 SMART LRR_CC_2 104 130 IPR006553 -
Prci15g0385 372 SMART LRR_CC_2 183 209 IPR006553 -
Prci15g0385 372 SMART LRR_CC_2 262 287 IPR006553 -
Prci15g0385 372 SMART LRR_CC_2 303 328 IPR006553 -
Prci15g0385 372 PANTHER UNCHARACTERIZED 80 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0385 Prci-Chr15 2530464 2534404 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0385 K03875 - gmx:100818928 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0354 2 2526031 2528788 Prci15g0385 15 2530464 2534404 CCT
Prci15g0385 15 2530464 2534404 Prci15g0385 15 2530464 2534404 ECH