LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g3614	ATGGGCGCAAGCAGAAAGCTTCAGGGCGAGATAGATCGCGTTCTCAAGAAGGTCCAAGAAGGCGTCGAGGTCTTCGATAGTATCTGGAACAAGGTTTACGATACGGACAATGCTAACCAGAAGGAGAAATTTGAGGCAGACCTAAAGAAGGAAATTAAGAAGCTCCAGAGGTACAGAGACCAAATTAAGACTTGGATACAGTCTAGCGAGATCAAGGATAAGAAGGCTCTGGTGGATGCTCGCAAGACCATCGAGCGTGAAATGGAAAGATTTAAGGTCTGTGAAAAGGAAACTAAGACCAAAGCGTTCTCCAAAGAAGGCTTGGGCCAACAGCCTAAAACTGATCCAAAGGAGAAGGCTAAGTCAGAGACAAGGGATTGGTTGAATAATGTGGTTGGAGAGTTAGAATCTCAAATCGATAACTTCGAAGCTGAGCTTGAAGGGCTTTCTGTCAAAAAGGGAAAAAGCAGGCCACCTAGATTGATGCATCTAGAGATGTCAATTGCCCGACACAAGGCTCATATAAAAAAATGTGAGTTACTCTTGAGGCTGCTAGACAATGATGAATTAAGTCCTGAGCAGGTTAATGATGTCAAAGAGTTTTTGGATGACTATGTGGAGCGAAATCAGGAGGACTTTGATGAATTCAGTGACGTTGATGAACTATACAGTTCATTACCTTTAGACAAGGTGGAGTCTCTTGAAGATCTTGTCACAATTGGTCCACCTGGTCTTGCTAAGGGTGCACTTGGTGTTAGCTTGAAGACATCTTTAGCTGCATCGGCTTTGCAAACACCTGAACTAGCTGATGATGCTGCTTCCCAGGATAGCAATTCTGATACTGTTGTCAGAACACCACCTTCTAAAAGTAGTGGAATCAGTTCTGCCATGTCGACACCAGCTGGGAACTTTGCTACTCCTGTTTCTTTGAATGTTTCATCTCAGAACTTGTCCAGTGCAACTGCCACTGCATCAGCCCTCCCTGGTTCAAATTCTGTTCGGACTGCTCTGGAGAATACAGGTGCTGCTAATTCTTCGTCTGTAAATCAGTCTACCTCTGTGAAGGAAGATGAGGTTAATGGCTTCCCTGGCCGGAGAGCATCTCCATCACTTTCTGATGCCGCACATGCAAGAGGCATCAGTAGAAACAGCATACCAAATCAAGTGACGTCTGGCATCCCTCTTGCTTCCAGCAACATTGTGTCCGGCAACGGTGCCCTTGTTTCAGTCCCTTCCGGCAACGGTGCCCTTGTTTCAGTCCCTTCAGCCTCTGAAATAACAAAGAGAAACTTAATGGGAGCTGATGATAGGCTTGGAAGTAGTGGAATAGGGCAGCCTCTTCTATCACCCTTAAGTAATAGAATGATGTTGCCTCAGACTGTGAAGGTTAATGATGGAACTGGTTCAGTTGACCCTAATAATGTTAATGAGGCTGCAGCTGTATCTGGGAGAGTTTTTTCCCCTTCTGGTGGTCCTGGCATACAGTGGAGACCAGGAAGTCCTTTCCAGAACCAAAGTGAAACGGGGCAGCTTCGTGGAAGAACTGAAATAGCACCTGATCAGAGAGAAAAATTTCTGCAGAAGTTTCAGCAAGTGCAGCAACAAGGGCATAGTACCCTTCTTGGTATGCCTTCTCTATCTGGTGGAAGTCATAAGCAGTTTTCTGCTCAGCAGCAGCAAAGTCCTCTCTTGCAGCCGGCATCAGGTCTCAGTAGCGTTTCATCCGCCTCATTACAGATGCCATCCAATTCTATCCTTTCTCCCTCTAGTCAACAGCCGATGATATCAGGTGCATCTCAAGATTCTGATGGCAATTCTAAAGTTGAAGAACATCAGCAACAACAGAATGCTCCTGATGATTCAGTGTCTGAATCTACTGCAAATAATGGGCTTGGCAAAAATCTTCTAAATGAAGAGGACTTAAAATCCACATATGCTGTAGATTCGCCTCAGGCAGGAATGTCTGGTTCTCTTGCTGAGCCTGCTCAGAGCTCCAGAGATGCTGATTTCTCTTCTGGCCAACCTTTACAATCCAATCAACCTTCTGGTAACCTTGGTGTTATTGGAAGAAGAAGTGTTGTCGATTTTGGAGCCATTGGTGATAGTCTTAGCGGAACAAATGTTAATTCTGGTGGAGGGCGTGACCATTTATTTAATTTGCAGATGCTAGAGTCAGCTTACTACAAACTTCCGCAACCTAAAGACTCAGAACGTCCAAGGACTTATACTCCTAAGCACCCGGTAATAACACCTCCAAGTTATCCTCAAGTACAGGCGCCCATTGTCAGTAATCCTGCCTTTTGGGAGAGAGTGGGTCTTGATCCATATGGCACTGACACCCTCTTCTTTGCATTTTATTATCAACAGAACACTTACCAACAATATTTGGCTGCAAAAGAACTAAAGAAGCAGTCTTGGAGATATCACAGAAAATATAACACATGGTTTCAGAGACATGAAGAGCCAAAAGTCGCTACAGATGAATTTGAGCAGGGAACATATGTATACTTCGATTTTCATGTTGCAAATGATGACCTGCAACATGGGTGGTGTCAAAGAATCAAGACCGAGTTCACATTTGAGTATAATTATCTTGAAGACGAGCTTAGTGTATAG	2616	0.4438	MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKTIEREMERFKVCEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKSRPPRLMHLEMSIARHKAHIKKCELLLRLLDNDELSPEQVNDVKEFLDDYVERNQEDFDEFSDVDELYSSLPLDKVESLEDLVTIGPPGLAKGALGVSLKTSLAASALQTPELADDAASQDSNSDTVVRTPPSKSSGISSAMSTPAGNFATPVSLNVSSQNLSSATATASALPGSNSVRTALENTGAANSSSVNQSTSVKEDEVNGFPGRRASPSLSDAAHARGISRNSIPNQVTSGIPLASSNIVSGNGALVSVPSGNGALVSVPSASEITKRNLMGADDRLGSSGIGQPLLSPLSNRMMLPQTVKVNDGTGSVDPNNVNEAAAVSGRVFSPSGGPGIQWRPGSPFQNQSETGQLRGRTEIAPDQREKFLQKFQQVQQQGHSTLLGMPSLSGGSHKQFSAQQQQSPLLQPASGLSSVSSASLQMPSNSILSPSSQQPMISGASQDSDGNSKVEEHQQQQNAPDDSVSESTANNGLGKNLLNEEDLKSTYAVDSPQAGMSGSLAEPAQSSRDADFSSGQPLQSNQPSGNLGVIGRRSVVDFGAIGDSLSGTNVNSGGGRDHLFNLQMLESAYYKLPQPKDSERPRTYTPKHPVITPPSYPQVQAPIVSNPAFWERVGLDPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEFEQGTYVYFDFHVANDDLQHGWCQRIKTEFTFEYNYLEDELSV	871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g3614	871	PANTHER	CCR4 NOT-RELATED	24	868	IPR040168	GO:0030015
	Prci1g3614	871	MobiDBLite	consensus disorder prediction	528	633	-	-
	Prci1g3614	871	MobiDBLite	consensus disorder prediction	483	511	-	-
	Prci1g3614	871	MobiDBLite	consensus disorder prediction	340	357	-	-
	Prci1g3614	871	Coils	Coil	41	61	-	-
	Prci1g3614	871	MobiDBLite	consensus disorder prediction	528	687	-	-
	Prci1g3614	871	MobiDBLite	consensus disorder prediction	268	298	-	-
	Prci1g3614	871	MobiDBLite	consensus disorder prediction	340	376	-	-
	Prci1g3614	871	Pfam	NOT2 / NOT3 / NOT5 family	726	865	IPR007282	GO:0006355
	Prci1g3614	871	Gene3D	-	713	866	IPR038635	-
	Prci1g3614	871	MobiDBLite	consensus disorder prediction	103	124	-	-
	Prci1g3614	871	FunFam	CCR4-NOT transcription complex subunit 3 isoform X1	711	866	-	-
	Prci1g3614	871	PIRSF	NOT_su_3_5	1	871	IPR012270	GO:0006355\|GO:0030015
	Prci1g3614	871	Pfam	Not1 N-terminal domain, CCR4-Not complex component	4	229	IPR007207	GO:0005634\|GO:0006355
	Prci1g3614	871	MobiDBLite	consensus disorder prediction	648	686	-	-
	Prci1g3614	871	Coils	Coil	125	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g3614	Prci-Chr1	52904096	52914738	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g3614	K12580		-	qsa:O6P43_006150	1259.59

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci1g3614	1	52904096	52914738	Prci3g2284	3	36565280	36577054	CCT
	Prci1g3614	1	52904096	52914738	Prci1g3614	1	52904096	52914738	ECH