Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g2809 ATGGAAGCTGCAAAGAATTTGTTTTGTTCATCCCCGTTTCCATCAAGAACTAATCACTGGAGCGGTCCTCCTTCGTCTTCTTCATCTTCTTCTTTAGTTTTCACGTTTCATGAACAAGCCACTCCTGCAGTCACCTCTAGGACTGCTATTTTTGCTTCCCAGCATTTTCCCACCTCAGTTCTTTTACAAGAGCAACGTCATGAGTACAGACCTATACTGCGCACGCATAAGGAAGAAAAGACATCCCAGGCAACATTAGATACAAGGCAGATGGATATGGTCTCAGTTCATGAAGACAATAGCCCTGGCAATGCTGATCAGTTAGTGCATGACTTTAAGCAGCGACTGCAAATTTGGCCTTGTTTACGGAACTTGTTGACTTCCTTACCAGCAGAGGAAATTGCAACATCTTCAACTCCGCAGCCTGTTACCTCTGACTTAGAGCATCCTGCAGAAGTTGAACAGCATGATGCAGTTGCTCTTGCTAAGCAAGCATTGTCAGCCTCAGAACAAGCTGCCTTGGTAGCTGCAGACATGAAATCAATCAAAGCTGATGATGATGTTTTACCTCCTCTAGGTTTTTCCTCCACAAGTTTGGATGAAATTTCACTTGGAAAGAATAAAATTGTGAGGTCAACACGGCTTCTAGGGAGACAATCAAAGAAGAGAAAAAAATCAAAGGCAAAAGTCTTAGACGAAGAAAGCTATCTTTCTAAAAAGGCTGAATTAAAAGGAAGGTTACATGTGGAAAAGAAGATAAATGAAGGGTTTGATCAAAATGATCCCCTACGCTTGTTCCTATGGGGTCCTGAAACAAAGCAACTTTTGACTCTGGAAGAAGAAACTAAATTGGTTCTTCAGCTACAGGATTTATTGAGATTGGAAGGAGTAAAGAAAAGACTTCAATCACAATTTGGGCGGGAACCAACTTTGGCTGAATGGGCTGATAGTGTGGGCCTCACCTGTCAAGCCCTGCAGTTTCAGCTTTATTCTGGTAACCGCAGCAGAGAGAAGCTCATTTATGCAAATTTACGAATGGTAGTTCACATTGCTAAACATTATCAGGGGCGTGGTCTCAGTTTTCAGGACTTATTACAGGAGGGAAGTATGGGGCTTATGAAGAGTGTCGAGAAGTTTAAACCCCAAGCAGGTTGTCGTTTTGGTACGTACGCCTACTGGTGGATAAGGCAAACTATTAGGAAGGCCATATTTCAACATTCCAGGACAATTCGTCTGCCGGAGAATGTATATACCCTTTTGGGCAAGGTATCAGAGACAAAGAAATTGTACATTCGAGAAGGAAATCTTCATCCCACCAAAGAAGAACTAGCAAAAAGGGTAGGAATTACAGTAGAGAAGTTAGAAAAGTTGCTATATGTTGCGAGAATTCCAATTTCAATGCAACAAACAGTGTGGGCAGACCAAGATACCACTTTCCAGGAGGTTACTGCAGACACAGCAATTGAGGTCCCAGATGTGAGTGTTGCAAAACAGATGATGAGGCGGCATGTGCGGAACCTCTTAAGTATCTTGAACCCAAAAGAAAGGAGGATAATCCGGCTAAGATTCGGTATTGAGGACGGCGAACAGAAATCATTGTCAGAGATTGGAAACACATTTGGCTTGTCTAAGGAAAGGGTTCGACAATTAGAGAGCCGAGCATTGTACAAGCTGAAGCAGTGCCTTGGCAGCCAAGGACTTGATGCATATGCAGAATTGCTTGTATAG 1728 0.4282 MEAAKNLFCSSPFPSRTNHWSGPPSSSSSSSLVFTFHEQATPAVTSRTAIFASQHFPTSVLLQEQRHEYRPILRTHKEEKTSQATLDTRQMDMVSVHEDNSPGNADQLVHDFKQRLQIWPCLRNLLTSLPAEEIATSSTPQPVTSDLEHPAEVEQHDAVALAKQALSASEQAALVAADMKSIKADDDVLPPLGFSSTSLDEISLGKNKIVRSTRLLGRQSKKRKKSKAKVLDEESYLSKKAELKGRLHVEKKINEGFDQNDPLRLFLWGPETKQLLTLEEETKLVLQLQDLLRLEGVKKRLQSQFGREPTLAEWADSVGLTCQALQFQLYSGNRSREKLIYANLRMVVHIAKHYQGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVYTLLGKVSETKKLYIREGNLHPTKEELAKRVGITVEKLEKLLYVARIPISMQQTVWADQDTTFQEVTADTAIEVPDVSVAKQMMRRHVRNLLSILNPKERRIIRLRFGIEDGEQKSLSEIGNTFGLSKERVRQLESRALYKLKQCLGSQGLDAYAELLV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g2809 575 Gene3D - 412 489 IPR036388 -
Prci1g2809 575 Pfam Sigma-70 region 3 420 492 IPR007624 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 Pfam Sigma-70, region 4 507 560 IPR007630 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 259 409 IPR013325 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 MobiDBLite consensus disorder prediction 10 24 - -
Prci1g2809 575 Pfam Sigma-70 region 2 340 408 IPR007627 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 PRINTS Major sigma-70 factor signature 387 395 IPR000943 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 PRINTS Major sigma-70 factor signature 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 PRINTS Major sigma-70 factor signature 511 523 IPR000943 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 PRINTS Major sigma-70 factor signature 547 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 PRINTS Major sigma-70 factor signature 532 547 IPR000943 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 472 570 IPR013324 -
Prci1g2809 575 CDD Sigma70_r4 501 559 - -
Prci1g2809 575 MobiDBLite consensus disorder prediction 1 24 - -
Prci1g2809 575 ProSitePatterns Sigma-70 factors family signature 2. 532 558 IPR000943 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 ProSitePatterns Sigma-70 factors family signature 1. 363 376 IPR000943 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 Gene3D - 494 574 IPR036388 -
Prci1g2809 575 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 412 485 IPR013324 -
Prci1g2809 575 Gene3D - 144 408 - -
Prci1g2809 575 NCBIfam sigma-70 family RNA polymerase sigma factor 335 562 IPR014284 GO:0003700|GO:0006352|GO:0006355
Prci1g2809 575 PIRSF Sigma_factor_SigC 1 575 IPR016262 -
Prci1g2809 575 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 147 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g2809 Prci-Chr1 46908425 46913344 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g2809 - - qsa:O6P43_010271 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g2988 3 41509772 41524491 Prci1g2809 1 46908425 46913344 CCT
Prci1g2809 1 46908425 46913344 Prci1g2809 1 46908425 46913344 ECH