Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g1013 ATGTCCAAGGTCATCGGGTTCACCGGAGGTGACGATTTTTGCCCTGGGGGATCAATATACACTAATCCCAAGGAATCTAATCTATTATTGTCTCTTGGCAACCATGTTGATGTTTACTTTCCTCCTCGGAAGAGATCTCGTGTCACAGCACCTTTTGTTTTTGACGGAGAATGGTTTGAACAGAAGCAGAATACATCTATTGAAGCTTTGCCAGATGAATGCCTTTTTGAGATCTTTAGAAGGTTGCCCGTTGGCCAAGAAAGGAGTGCATGTGCTCGTGTCTCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGTAAGGATGAAATCTGCAGCAGCAAAGTCACCAGACATGAGAACAAGTTTTGTGCAAAGGAGGCTGATGATCTGGAATTTGGGGGTGATGGATACCTGTCCCGGAGCCTAGTGGGTAAGAAGGCAACGGATGTTAGACTTGCTGCCATTGCTGTTGGTACTGCTTCTCGTGGAGGACTTGGACAACTTTCAATCCATGGGAGCAATTCAGATCGTGCGGTGACCAATCTAGGTCTCAAGTCTGTTGCCCATGGATGCCCTTCTTTAAAGGGGCTTTCACTGTGGGATATTGCCACCATCAGTGATGAAGGCCTTATTGATATCGCTCATGGATGTCAGCAGCTAGAGAAGCTGGACCTTTGCAAGTGCCCGGCAATTTCTGACAAGGCTTTAATTGCAATTGCAAAGAACTGCCCTAATTTGACTGAGTTATCCATAGAATCATGCCCTAAAATTGGTAATGACGGTCTACAAGCTATTGGGCAGTTATGCCCCAATCTGAGGTCTATTTCAATCAAGAACTGTGCATGTGTTGGTGATCAGGGAATTGCAGGCCTGCTTTCTTCACGTTCTTTTGATTTGGTAAAGGTGAAGCTTCAGGGTCTGGCTATTTCTGATCTCTCTCTCGCTGTTATTGGACATTATGGAAAGGCAGTTACTGATCTTGTCCTATCTTGCCTCCCGAATGTTGGTGAGAGGGGATTCTGGGTCATGGGTAGTGGTCATGGATTGCAGAAGCTAAAGTCTCTCACGATTGCATCCTGCCAAGGAGTTACAGATGTTGGGCTTGAATCTGTAGGAAAGGGCTGTCCGAATCTCAAACACTTCCACCTTCGTAAATGTGCATTTCTATCGGACAATGGATTGTTATCATTTGCCAAAGCTGCTCCATCACTTGAGAGCCTGCGGTTTGAGGAGTGCCACAGGATTACCCAACTTGGGTTTTTTGGTGTTATTAACTGTAGTGCAAAATTGAAGGCTCTTGCCCTTGCAAGTTGCTTTGGATTCAGAGATCTGAATTTGAGATTGCCTCAGGTGTCTCCATGCAAGTCACTCCAATCACTAACAATCTCTAACTGCCCTGGATTTGGTGATTCCACCTTGGCTGTTCTAGGGAAGTTGTGCCCTCATCTGCAGCATATTGAATTAAGTCGCCTTGAGGGTGTGACAGATGCTGGGTTGCTTCCACTGATGGAATGCTCTGAGGCTGGTCTGGTTAAGGTTAATCTTAGTGGTTGCATAAATCTGACAGACGAAGTAGTCTTGTCAATAACCAATAAGCATGGCTGGACACTTGAGATGCTAAACCTTGATGGTTGTAAAAGAATCAGTGATGCTAGCTTGATAGCAATTGCCGGAAATTGCCCATTGCTATCTGATCTTGACGTTTCCAAGTGCACAGTCACTGATGCTGGAATTGCAGCCCTGGGCAGTGCTGACCGACTCAACTTGCAGGTCCTTTCTTTGGCAGGCTGCTCTTTGGTTTCAGATAGGAGCCTGTCTAGTTTGACGAAATTGGGCCAGACCCTTTTGGGATTAAATATCCAGCAATGCAAAGCAATCAGCAGCAGATCCGTCGATTTGCTTTTGGAACTTCTTTGGAGGTGTGACTTCCTCTTCTGA 1938 0.4577 MSKVIGFTGGDDFCPGGSIYTNPKESNLLLSLGNHVDVYFPPRKRSRVTAPFVFDGEWFEQKQNTSIEALPDECLFEIFRRLPVGQERSACARVSKRWLMLLSSICKDEICSSKVTRHENKFCAKEADDLEFGGDGYLSRSLVGKKATDVRLAAIAVGTASRGGLGQLSIHGSNSDRAVTNLGLKSVAHGCPSLKGLSLWDIATISDEGLIDIAHGCQQLEKLDLCKCPAISDKALIAIAKNCPNLTELSIESCPKIGNDGLQAIGQLCPNLRSISIKNCACVGDQGIAGLLSSRSFDLVKVKLQGLAISDLSLAVIGHYGKAVTDLVLSCLPNVGERGFWVMGSGHGLQKLKSLTIASCQGVTDVGLESVGKGCPNLKHFHLRKCAFLSDNGLLSFAKAAPSLESLRFEECHRITQLGFFGVINCSAKLKALALASCFGFRDLNLRLPQVSPCKSLQSLTISNCPGFGDSTLAVLGKLCPHLQHIELSRLEGVTDAGLLPLMECSEAGLVKVNLSGCINLTDEVVLSITNKHGWTLEMLNLDGCKRISDASLIAIAGNCPLLSDLDVSKCTVTDAGIAALGSADRLNLQVLSLAGCSLVSDRSLSSLTKLGQTLLGLNIQQCKAISSRSVDLLLELLWRCDFLF 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g1013 645 SMART LRR_CC_2 534 559 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 401 426 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 349 374 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 560 584 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 375 400 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 217 242 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 191 216 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 454 479 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 269 294 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 480 505 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 586 611 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 507 532 IPR006553 -
Prci15g1013 645 SMART LRR_CC_2 243 268 IPR006553 -
Prci15g1013 645 FunFam EIN3-binding F-box protein 1 137 255 - -
Prci15g1013 645 SUPERFAMILY RNI-like 181 642 - -
Prci15g1013 645 SMART fbox_2 70 111 IPR001810 GO:0005515
Prci15g1013 645 FunFam EIN3-binding F-box protein 1 256 445 - -
Prci15g1013 645 CDD F-box_AtTIR1-like 67 104 - -
Prci15g1013 645 Gene3D Ribonuclease Inhibitor 145 242 IPR032675 -
Prci15g1013 645 Pfam Leucine Rich repeat 560 581 IPR001611 GO:0005515
Prci15g1013 645 Pfam Leucine Rich repeat 375 398 IPR001611 GO:0005515
Prci15g1013 645 Pfam Leucine Rich repeat 242 265 IPR001611 GO:0005515
Prci15g1013 645 Pfam Leucine Rich repeat 350 370 IPR001611 GO:0005515
Prci15g1013 645 PANTHER UNCHARACTERIZED 536 629 - -
Prci15g1013 645 Gene3D - 60 112 - -
Prci15g1013 645 FunFam EIN3-binding F-box protein 1 60 109 - -
Prci15g1013 645 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Prci15g1013 645 Pfam F-box domain 70 107 IPR001810 GO:0005515
Prci15g1013 645 Gene3D Ribonuclease Inhibitor 445 643 IPR032675 -
Prci15g1013 645 FunFam EIN3-binding F-box protein 1 506 643 - -
Prci15g1013 645 Gene3D Ribonuclease Inhibitor 243 444 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g1013 Prci-Chr15 6280442 6284187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g1013 K14515 - gmx:100820247 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1016 2 7493181 7496564 Prci15g1013 15 6280442 6284187 CCT
Prci15g1013 15 6280442 6284187 Prci15g1013 15 6280442 6284187 ECH