Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2571 ATGCAACGCAAGAAAACAATGACCATGAGTTGGAAAGGCATTGATGATGACAATGACGATGAGCACTTTTTTGAAAGCTTGGACGGTGCTTCGTCGTCCGATGAGGATGAGGAATTCCAAGAAAGCCGCATGTCCTTCTCAGCAAATTCTCAGAGATTCAGAATCATGACAAGAAAAGCGTCGATGGCGCCAATGGCGATGGCGATCCCTGACTTCGACTACAACATATGGATGGCAGCACCAGGATCGATCACTGAACGAAGAAGACGATTGCTTTATGGAATGGGCCTAAACGAGAACAAGGAAAGCTTGAGGTTGGCGAGCATAGTGATCGGGCGTGCAATGACGAGGAAGTTTGAAAATCATGCTCCAGCTGAGCCCAGTGCGCTCGGTAAGTCCACAGAGGCTACCGTTCCTAATACTAGGGGTGCAGCTGTTGCTGTAACTGTTGAAACTAATGCTGCTGCTGCTACAAATGCTGAAACTGCTGCCTCATGTGATCAGAATAAAACAGAGCATAAAACTATATCTGAGTCACCACCCTCACCACCGTCGGCGGATGAGCATAAAACAGAGCATTCCCCTCTGCCATTCGTTCTAGTCAGGTCACGCTCTGACGGTGACATAGATTGCGATACTTATTCCTTGCCTAGAATGAGGAAGGAGGAACTAGTAGGTAAGGTCTCAAAGCAGCGTCTGACAAGAACATCATCAGAGATCACCCTCGCTCGTCCTCGCATGTGCCCCTACACATACTATGGCCCAGCCTCTGCTGCAACAATGAAACAGGAGGCCAGTTCAGGTGCTTTAGGGGATAACCAATCTGGGCGCCAACATGACCGCAAACTAACCACGGTCGTGTCAAATACTAGATTCGCTTCCTTCTTCCTTATCAAGAACCTCGACACCGGAAAAGAGTTCATTGTCACCGGAAAGGACCCTGGCAACGACGGCACATGGAGCAGTCTGAATGACATACAAACAGGAAAAAAACTAACGATGGAGGAGTTCGAGAAATCTGTAGGGCACTCACCGATCGTTAAAGAGCTCATGCGACGCGGGAGAGAAAAAAATGACGAGAGTAAGCCGAGCGCAAACTACTACCTGAACAAGAGCTTGAGAATGAGCAAGAAAACTGGGGTTGCTCTGTTGAAGAACATAAAGGGCGTGGCAAGCGGATTCATCGGCGAAAGAGAGAGATCGGAGAGCATTAATGAAGTAACGCCTCCTAATTTGCCTCCCCTACCTCCTTCTGCACCACAACCAGCAGCTAGCTCAGATCCAAATCAGAAGCAGAATAAGAACAACGAATGGGTTAGGGTGAGGCAGAGCGGGAAAACTCATAAAGAGCTTTCAGCGTTGCACATGTGCCAAGAATTTCAGGCTCATGAGGGGGGTATTTGGATCATCAAGTTTAGCTGGGACGGCCGTTATTTGGCAAGTGGCGGCGAGGATAAGGTGATTCACGTGTGGGAAGTGCAGGAGTGTGAGCTCATGTCCTTGACCGCGGAGGAAGGGAATCTCACTCCACTTCATCCCTCGCTGCTTGCTTCGTCGGCCGCCCAAGAGGGGGCGATGGAGGAGGAGGTGGCAGCCAAGAAAAAAGGCAAACCCGGGACTAAAAAAGATGATAAGGTTCCGGAGCACGTTCATGTGCCGGAGACCGTGTTCTCCCTTTCTGATAAACCCTTCTGCACTTTCCTAGGCCATTCTGAAGACGTTTTGGATTTTTCTTGGTCCAAAAGTCAGTTGCTTCTCTCGTCTTCAATGGATAAAACAGTGAGACTATGGGACCTGGAATTGAAGTCCTGCTTGAAGGTGTTCACCCATAATGACTATGTAACGTGCGTACAGTTCAATCCAATAGACGAGGATTATTTCATAAGTGGGTCCCTGGATGCTAAGATTAGAATATGGAGCATTCCTCAACGGCAAGTCGTGGATTGGGCCGACGTTCATGAAATGGTCACCGCCGTTTCTTACACTCCTGACGGTCAGGCTGCTCTTGTTGGTACACATAATGGGACTTGTTGTATGTATGGCACACAAGACTGCAAACTAAGTCAAACAAGCACAATTGATTTACAGCAGAGAAAGAAAGCTCCGCTGAGAAAAATCACTGGTTTTCAGTTCGCACCGAGTAATCCGTCAGAAGTGCTTGTCACTTCAGCTGATGCCAGGATTAAAATTGTAGAAGGCACAAAAGTTGTTCATAAGTTCCAAGGTTTCCGAAATTCAAACAGTCAAATCGCGGCTTCATTCAGTCCGAGTGGAAGACACGTGATAAGTGCGAGCGAAGATTCTCAGGTATACATGTGGAAGTACGAAGAGCCTCGACAAGGAGGCAATAACGCAAAAGCAAGAGCATTAGTTATGACTAGGGCTTTTGAGAGCTTCCCCTGCAAGGATGTTTCTGTGGCAGTGCCATGGCCTTTCACCATCAAGGGCGATCCCCCTCAAGCTAACAAGAAGACTTCCAAACGCCCTTCAGATGATAACAGCAAGAGAGGTAATCTTCCCCCTCTTCCCAACAAGAAGGAATCAGATCCTTCCGCCACAGATCAACCTAACACCGACGCCGCCGCCGATTCACCGCCCAACAACGGCACCACGACGTTGCCGCCTCTCCCTCCCAAGAAAAATACCACCGACGATGAAAATAGCTCCGAAAGTACTGATAACAGTGATAGTGCTAGTTGCACCGCCGCTGAAAGTGGTCCCGATGATCGCCAAGAAGTGGATCCCATGGCCATATCGCTAACAGAGTCGTTGGCTTCGGATTCAGCCAGCTCGACGAGGCAAGATGATCCGTCTGCTATATCTGCTACCAATGCTCCGACCTCTTCGAGGTCTTCGTTTCGCCTTCTAACTGATAATAGCCAAGCAGCCACGTCATCAGGCTATCCTGTAGCGTGGGGCCTGGTGATTGCGACGGCCAGCATAGGGGGTGAAATTAGGTGCTATCAGAATTTTGGGTTGCCTAAAAGGATCAGCAGCGGCTTCTTTTGA 3009 0.4892 MQRKKTMTMSWKGIDDDNDDEHFFESLDGASSSDEDEEFQESRMSFSANSQRFRIMTRKASMAPMAMAIPDFDYNIWMAAPGSITERRRRLLYGMGLNENKESLRLASIVIGRAMTRKFENHAPAEPSALGKSTEATVPNTRGAAVAVTVETNAAAATNAETAASCDQNKTEHKTISESPPSPPSADEHKTEHSPLPFVLVRSRSDGDIDCDTYSLPRMRKEELVGKVSKQRLTRTSSEITLARPRMCPYTYYGPASAATMKQEASSGALGDNQSGRQHDRKLTTVVSNTRFASFFLIKNLDTGKEFIVTGKDPGNDGTWSSLNDIQTGKKLTMEEFEKSVGHSPIVKELMRRGREKNDESKPSANYYLNKSLRMSKKTGVALLKNIKGVASGFIGERERSESINEVTPPNLPPLPPSAPQPAASSDPNQKQNKNNEWVRVRQSGKTHKELSALHMCQEFQAHEGGIWIIKFSWDGRYLASGGEDKVIHVWEVQECELMSLTAEEGNLTPLHPSLLASSAAQEGAMEEEVAAKKKGKPGTKKDDKVPEHVHVPETVFSLSDKPFCTFLGHSEDVLDFSWSKSQLLLSSSMDKTVRLWDLELKSCLKVFTHNDYVTCVQFNPIDEDYFISGSLDAKIRIWSIPQRQVVDWADVHEMVTAVSYTPDGQAALVGTHNGTCCMYGTQDCKLSQTSTIDLQQRKKAPLRKITGFQFAPSNPSEVLVTSADARIKIVEGTKVVHKFQGFRNSNSQIAASFSPSGRHVISASEDSQVYMWKYEEPRQGGNNAKARALVMTRAFESFPCKDVSVAVPWPFTIKGDPPQANKKTSKRPSDDNSKRGNLPPLPNKKESDPSATDQPNTDAAADSPPNNGTTTLPPLPPKKNTTDDENSSESTDNSDSASCTAAESGPDDRQEVDPMAISLTESLASDSASSTRQDDPSAISATNAPTSSRSSFRLLTDNSQAATSSGYPVAWGLVIATASIGGEIRCYQNFGLPKRISSGFF 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2571 1002 ProSiteProfiles Trp-Asp (WD) repeats profile. 753 776 IPR001680 GO:0005515
Prci13g2571 1002 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Prci13g2571 1002 SUPERFAMILY WD40 repeat-like 454 778 IPR036322 GO:0005515
Prci13g2571 1002 SMART WD40_4 601 640 IPR001680 GO:0005515
Prci13g2571 1002 SMART WD40_4 560 598 IPR001680 GO:0005515
Prci13g2571 1002 SMART WD40_4 643 681 IPR001680 GO:0005515
Prci13g2571 1002 SMART WD40_4 733 774 IPR001680 GO:0005515
Prci13g2571 1002 SMART WD40_4 692 732 IPR001680 GO:0005515
Prci13g2571 1002 SMART WD40_4 453 492 IPR001680 GO:0005515
Prci13g2571 1002 MobiDBLite consensus disorder prediction 1 44 - -
Prci13g2571 1002 MobiDBLite consensus disorder prediction 921 952 - -
Prci13g2571 1002 Pfam WD domain, G-beta repeat 603 640 IPR001680 GO:0005515
Prci13g2571 1002 Pfam WD domain, G-beta repeat 459 491 IPR001680 GO:0005515
Prci13g2571 1002 Pfam WD domain, G-beta repeat 563 598 IPR001680 GO:0005515
Prci13g2571 1002 Pfam WD domain, G-beta repeat 737 774 IPR001680 GO:0005515
Prci13g2571 1002 ProSitePatterns Trp-Asp (WD) repeats signature. 585 599 IPR019775 -
Prci13g2571 1002 PANTHER WD REPEAT DOMAIN 44 16 994 IPR040324 -
Prci13g2571 1002 MobiDBLite consensus disorder prediction 409 423 - -
Prci13g2571 1002 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 567 600 - -
Prci13g2571 1002 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 607 641 - -
Prci13g2571 1002 ProSiteProfiles Trp-Asp (WD) repeats profile. 460 501 IPR001680 GO:0005515
Prci13g2571 1002 ProSiteProfiles Trp-Asp (WD) repeats profile. 607 641 IPR001680 GO:0005515
Prci13g2571 1002 MobiDBLite consensus disorder prediction 527 546 - -
Prci13g2571 1002 PRINTS G protein beta WD-40 repeat signature 585 599 IPR020472 -
Prci13g2571 1002 PRINTS G protein beta WD-40 repeat signature 627 641 IPR020472 -
Prci13g2571 1002 PRINTS G protein beta WD-40 repeat signature 479 493 IPR020472 -
Prci13g2571 1002 Gene3D - 443 797 IPR015943 GO:0005515
Prci13g2571 1002 MobiDBLite consensus disorder prediction 9 29 - -
Prci13g2571 1002 MobiDBLite consensus disorder prediction 158 193 - -
Prci13g2571 1002 ProSiteProfiles Trp-Asp (WD) repeats profile. 567 607 IPR001680 GO:0005515
Prci13g2571 1002 MobiDBLite consensus disorder prediction 401 437 - -
Prci13g2571 1002 MobiDBLite consensus disorder prediction 811 952 - -
Prci13g2571 1002 MobiDBLite consensus disorder prediction 848 882 - -
Prci13g2571 1002 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 460 494 - -
Prci13g2571 1002 MobiDBLite consensus disorder prediction 522 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2571 Prci-Chr13 39824812 39829902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2571 564 774 Miscellaneous Gene Families AT5G08390 24.424 5.32e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2571 K20241 - gmx:100782200 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2571 13 39824812 39829902 Prci12g0386 12 3361480 3368007 CCT
Prci13g2571 13 39824812 39829902 Prci13g2571 13 39824812 39829902 ECH