Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2401 ATGCCGGAGGAAAGAGCTGTTGTAGCATGGTGCAAAATCCCCACTTTGAACAGCTCTCACTGCTCCTCCGACGACCATCTGCCGCTATGGAAGAACAACATCAGTACCCTCACTCTCACTCGCGGTGGCATTCCTTGTAAATTCGCTTGCGTTTCTGTGGCAGAAAGGAAATTGGACAAGGAGTTCTTTCCCAGTCCTGCTCAGCTCTTGAAGCATCCGCTTGCTATAGTCGCACTCGTGCCCAAAGACGCAGCGCTTTTCCTCGCCGGCGCCGTCGCCGGCGCTGCTGCCAAGACCGTCACTGCTCCGCTTGACCGTATCAAAATTCTTATGCAGACACATGGAGTGCGAGTTGGGCAAGAGAGTGCTAAAAAGGCGATTAATTTTATCGAGGCTGTAACAGTTATAGGAAAGGAAGAAGGCATTAAAGGTTACTGGAAGGGTAATCTCCCCCAGGTTATTCGGGTGATTCCTTATAGTGCCGTCCAGCTTTTTGCTTATGAAATTTATAAGAAATTGTTCAGGCGAAAGGATGGTGAGCTATCTGTTGTTGGAAGACTTGCAGCAGGTGCTTGTGCTGGCATGACGTCTACTTTTGTAACATATCCATTAGACGTCCTGAGATTACGATTAGCAGTTGAACCAGGCTATCAAACCATGTCACAGGTTGCCTTGAGCATGCTAAGAGAGGAAGGTTTGGCATCATTCTATTATGGCCTCGGGCCTTCTCTTATTGGAATAGCTCCTTATATTGCAGTAAACTTTTGTGTTTTTGACTTATTAAAGAAGTCTTTGCCAGAAAAGTATCAAAAGAGAACTGAAACATCTCTCATCACAGCTGTGCTTTCTGCATCTCTTGCCACCCTTACATGCTATCCTCTGGACACTGTACGGAGGCAAATGCAATTGAGGGGCACACCTTATAAGACAGTTTTAGATGCCCTTTCAGGTATTGTGGCACGCGAAGGAGTTATCGGCTTGTATCGGGGCTTTGTACCCAATGCTTTGAAAACCCTACCAAACAGCAGCATCAGGCTTACTACATATGACTTCATTAAACGCGTAATTGCAGCTAGTGAGAAAGAGTTTCAGATAATCACAGAGGAGAATCGCCAGAAACAAAACTAG 1128 0.4619 MPEERAVVAWCKIPTLNSSHCSSDDHLPLWKNNISTLTLTRGGIPCKFACVSVAERKLDKEFFPSPAQLLKHPLAIVALVPKDAALFLAGAVAGAAAKTVTAPLDRIKILMQTHGVRVGQESAKKAINFIEAVTVIGKEEGIKGYWKGNLPQVIRVIPYSAVQLFAYEIYKKLFRRKDGELSVVGRLAAGACAGMTSTFVTYPLDVLRLRLAVEPGYQTMSQVALSMLREEGLASFYYGLGPSLIGIAPYIAVNFCVFDLLKKSLPEKYQKRTETSLITAVLSASLATLTCYPLDTVRRQMQLRGTPYKTVLDALSGIVAREGVIGLYRGFVPNALKTLPNSSIRLTTYDFIKRVIAASEKEFQIITEENRQKQN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2401 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 271 355 IPR018108 -
Prci13g2401 375 Gene3D Mitochondrial carrier domain 83 356 IPR023395 -
Prci13g2401 375 PRINTS Mitochondrial carrier protein signature 196 214 IPR002067 GO:0055085
Prci13g2401 375 PRINTS Mitochondrial carrier protein signature 148 168 IPR002067 GO:0055085
Prci13g2401 375 PRINTS Mitochondrial carrier protein signature 99 113 IPR002067 GO:0055085
Prci13g2401 375 PRINTS Mitochondrial carrier protein signature 280 302 IPR002067 GO:0055085
Prci13g2401 375 PRINTS Mitochondrial carrier protein signature 86 99 IPR002067 GO:0055085
Prci13g2401 375 PRINTS Mitochondrial carrier protein signature 237 255 IPR002067 GO:0055085
Prci13g2401 375 SUPERFAMILY Mitochondrial carrier 84 351 IPR023395 -
Prci13g2401 375 FunFam Envelope ADP,ATP carrier protein 83 361 - -
Prci13g2401 375 PANTHER SOLUTE CARRIER FAMILY 25 82 356 - -
Prci13g2401 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 181 264 IPR018108 -
Prci13g2401 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 81 173 IPR018108 -
Prci13g2401 375 Pfam Mitochondrial carrier protein 275 357 IPR018108 -
Prci13g2401 375 Pfam Mitochondrial carrier protein 86 177 IPR018108 -
Prci13g2401 375 Pfam Mitochondrial carrier protein 180 267 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2401 Prci-Chr13 38449858 38455757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2401 1 375 Organic Solute Cotransporters AT3G51870 69.129 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2401 K14684 - cave:132191342 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g0198 12 1482648 1493333 Prci13g2401 13 38449858 38455757 CCT
Prci13g2401 13 38449858 38455757 Prci13g2401 13 38449858 38455757 ECH