Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2312 ATGTCCCTCCAAAACCCACCATTCAAAGACCTCCCTGACGCATCCCCAAAACCAGACAAGAAAAGCTTCGTCACTTCTCTAATGGAAGCAGCGACTCTCCGATCGCCTTCCTTCAAAGAAGACACCTACTTCGTTTCCCACTTGAAATCCTCCGAGAAGAAAGCCCTCCAAGACCTCAAAAACAAGCTCGCTGCCTCCGAGGTTTCGGACTCGTCCATGTGGGGCGTTTCCCTGCTCGGCGGCGACGACAGAGCTGACGTTATCCTCCTGAAATTTCTTCGAGCGAGAGACTTCAGGGTGGGAGATTCGCTCACCATGCTTCTGAAATGCCTGGCTTGGAGGAAGCAGTTCGGAGCAGACGACGTCGTCGAGGAGGACTTGGGTTTCAAAGAGCTCGAAGGGGTCGTCGCATACATGCAGGGTTATGATAAAGAGGGACACCCTGTTTGCTACAATGCGTATGGAATTTTCAGGGACAGAGAAATGTACGAAAGAATCTTCGGGGACGAAGAGAAGCTGAGGAAATTCTTGAGATGGAGAGTTCAAGTTCTCGAAAGAGGAATCAAGCTTCTTCATTTCAAGCCAGGCGGGGTTAATTCTCTGATTCAGGTCACCGATTTGAAAGACATGCCCAAGAGGGAGCTCAGGGCAGCTTCCAATCATATTCTCTCTCTGTTCCAAGACAATTATCCAGAAATGGTGGCTCGTAAGATTTTCATAAATGTCCCGTGGTACTTCAGCATGCTCTATTCGATGTTCAGTCCTTTTTTGACCCAAAGAACGAAGAGCAAGTTTGTGATCTCTAAGGAGGGAAATGCTGCGGAGACACTCTACAAATTCATAAGGCCTGAGGATATTCCGGTTCAGTATGGCGGTCTGAGCCGACCGAGTGATTTGCAGAATGGTCCCCCAAAGCCTGCTTCTCAGTTCACTGTCAAAGGAGGGGAGAAGGTGAACATCCAGATTGAAGGAATTGAGGGTGGAGCAACAATAACATGGGACATAGTGGTAGGAGGGTGGGACTTAGAGTACAGTGCAGAGTTTGTGCCGAGTGCACAAGGAAGCTACAGCATTGCAGTTGAGAAGGCAAGGAAGGTAGCACCGTCTGAGGAAGCAATCCACAACTCTTTCACCACCAAAGAACCCGGCAATCTCGTCCTCTCCGTTGATAACTTTGCTTCCCGAAAGAAGAAAGTCGCTGCCTATCGCTACTTCGTCCGCAAATGCACCACCACCACCAACGACGCGTGA 1251 0.4956 MSLQNPPFKDLPDASPKPDKKSFVTSLMEAATLRSPSFKEDTYFVSHLKSSEKKALQDLKNKLAASEVSDSSMWGVSLLGGDDRADVILLKFLRARDFRVGDSLTMLLKCLAWRKQFGADDVVEEDLGFKELEGVVAYMQGYDKEGHPVCYNAYGIFRDREMYERIFGDEEKLRKFLRWRVQVLERGIKLLHFKPGGVNSLIQVTDLKDMPKRELRAASNHILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLSRPSDLQNGPPKPASQFTVKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPSAQGSYSIAVEKARKVAPSEEAIHNSFTTKEPGNLVLSVDNFASRKKKVAAYRYFVRKCTTTTNDA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2312 416 SMART sec14_4 131 295 IPR001251 -
Prci13g2312 416 FunFam SEC14 cytosolic factor family protein 133 308 - -
Prci13g2312 416 Gene3D GOLD domain 302 406 - -
Prci13g2312 416 SMART CRAL_TRIO_N_2 85 110 IPR011074 -
Prci13g2312 416 FunFam SEC14 cytosolic factor family protein 44 116 - -
Prci13g2312 416 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 125 298 IPR001251 -
Prci13g2312 416 PANTHER PATELLIN-1 23 408 IPR044834 GO:0008289
Prci13g2312 416 Pfam CRAL/TRIO domain 133 292 IPR001251 -
Prci13g2312 416 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 309 409 IPR036598 -
Prci13g2312 416 MobiDBLite consensus disorder prediction 1 21 - -
Prci13g2312 416 ProSiteProfiles GOLD domain profile. 274 408 IPR009038 -
Prci13g2312 416 Pfam CRAL/TRIO, N-terminal domain 47 108 IPR011074 -
Prci13g2312 416 SUPERFAMILY CRAL/TRIO N-terminal domain 43 126 IPR036273 -
Prci13g2312 416 SUPERFAMILY CRAL/TRIO domain 130 295 IPR036865 -
Prci13g2312 416 Gene3D - 19 301 IPR036865 -
Prci13g2312 416 CDD SEC14 129 293 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2312 Prci-Chr13 37572144 37575279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2312 89 287 Acyl Lipid Metabolism Gene Families AT1G55840 28.169 5.83e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2312 - - qsu:112015166 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2312 13 37572144 37575279 Prci12g0083 12 726869 729469 CCT
Prci13g2312 13 37572144 37575279 Prci13g2312 13 37572144 37575279 ECH