Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0737 ATGAACGGTGGCGATGAAGTCGTCGCAGCTCCGGCGGGTCCACCGCAGCCGCTGGAGTGGAAATTCTCGCAGGTTTTTGGGGAACGTACGGCCGGGGAGGAAGTTCAGGAAGTGGACATCATTTCTGCCATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTATTTGAGAGGACTGATTTGAAAGATCATGGAGGATCAAGAAGGGATTTGGAAAGGATGGATTATACAATAAGTAGGCATCCTGAGTTCCGATACAAAACTGAGTTTCAGAGTCATGAACCTGAGTTCGATTATCTAAAGAGCTTGGAAATCGAAGAGAAAATAAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCTTGTTTCTTCTATCTACAAATGATAAAACCATCAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATATCTGAGATGAATGTTGACCCTTCGAAAGCAATGGCAAATGGCTGTATTGGCAGTATCGCTAGTTCAAGTGATTCAAGTAGCCCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAAATCATACTGTTATCTGACCAGTGACTTCTCATTTCCACCTGGGGGCATCCCATCATTAAGATTACCTGTGGTAGTAACCAGCCATGAGACCAGTCTTGTAGCACGATGCCGTAGAGTATATGCCCATGCTCATGATTACCATATCAATTCTATATCAAGTAACAGTGATGGTGAAACTTTCATATCTGCTGATGATTTGCGGATAAATCTGTGGAACCTAGAAATTAGCAGCCAAAGTTTTAATATTGTAGATGTAAAGCCTGCAAACATGGAGGATCTGACTGAGGTTATAACATCAGCCGAGTTTCATCCTACCCATTGTAATATGTTGGCCTATAGCAGTTCAAAGGGTTCGATCCGTCTTGTTGATCTGCGCCAATCAGCATTGTGTGATACTCATGCCAAATTATTTGAGGAACAGGAGGCCCCAGGGTCCAGATCGTTTTTTACAGAGATTATTGCTTCAATTTCAGATATAAAATTTGGGAAGGATGGAAGATATATACTTAGTCGTGATTACATGACTCTAAAGTTGTGGGACATTAATATGGATTCTGGCCCGGTTGCAACTTTCCAGGTTCATGAATATCTAAGACCTAAGCTTTGTGATTTATATGAAAATGATTCAATTTTTGACAAGTTTGAGTGTTGTCTGAGTGGCGATGGGTTGCGCGTAGCGACTGGTTCTTACAGCAACCTATTTCGTGTGTTTGGCTGCATCCCAGGAAGTACTGAGGCTGCAACCTTGGAAGCCAGTAAAAACCCAATGAGGCGACAAGTTCAGACCCCTGCAAGGCCAGCTAGATCACTGGGAAGTAGTTTAACTCGAGTTGTAAGACGAGGAGCTGATAGTCCGGGTGTCGATGCAAATGGGAACTCCTTTGATTTCACTACAAAGTTGCTGCACTTAGCATGGCATCCGACCGAAAATTCAATTGCCTGTGCTGCTGCAAATAGTTTGTACATGTACTATGCATAA 1560 0.4282 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDLKDHGGSRRDLERMDYTISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAMANGCIGSIASSSDSSSPRPYLANGGSPDKSYCYLTSDFSFPPGGIPSLRLPVVVTSHETSLVARCRRVYAHAHDYHINSISSNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDTHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCIPGSTEAATLEASKNPMRRQVQTPARPARSLGSSLTRVVRRGADSPGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0737 519 PIRSF PPA2_B55 11 519 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 266 293 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 405 431 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 238 265 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 294 322 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 379 404 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 351 378 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 488 517 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 323 350 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 519 IPR000009 GO:0000159|GO:0019888
Prci13g0737 519 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Prci13g0737 519 SUPERFAMILY WD40 repeat-like 39 511 IPR036322 GO:0005515
Prci13g0737 519 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Prci13g0737 519 Gene3D - 84 517 IPR015943 GO:0005515
Prci13g0737 519 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 212 515 - -
Prci13g0737 519 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 200 - -
Prci13g0737 519 SMART WD40_4 227 266 IPR001680 GO:0005515
Prci13g0737 519 SMART WD40_4 378 432 IPR001680 GO:0005515
Prci13g0737 519 SMART WD40_4 277 317 IPR001680 GO:0005515
Prci13g0737 519 SMART WD40_4 105 145 IPR001680 GO:0005515
Prci13g0737 519 SMART WD40_4 31 66 IPR001680 GO:0005515
Prci13g0737 519 SMART WD40_4 336 374 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0737 Prci-Chr13 6127929 6136001 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0737 K04354 - qsa:O6P43_018282 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0737 13 6127929 6136001 Prci12g2096 12 38404663 38413063 CCT
Prci12g2096 12 38404663 38413063 Prci13g0737 13 6127929 6136001 ECH
Prci13g0737 13 6127929 6136001 Prci13g0737 13 6127929 6136001 ECH