Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2096 ATGAACGGTGGCGATGAGGTAGTCGCAGCTCCGGCGGGTCCAACGCAGCCGCTGGAGTGGAAATTCTCTCAGGTTTTCGGCGAACGTACGGCCGGCGAAGAAGTTCAGGAAGTGGATATAATTTCTGCTATTGAATTTGACAAGTCTGGTGACCATCTTGCAACTGGTGATCGTGGTGGTCGGGTTGTTCTTTTTGAGAGGACAGATACAAAAGATCATGGTGGATTGAGACGGGATTTGGAAAGGATGGACTATCCTCTAAGCAGGCATCCGGAATTCCGTTATAAAACAGAGTTTCAGAGTCACGAACCTGAGTTTGACTATCTTAAGAGCTTGGAAATTGAAGAGAAAATCAACAAAATTAGATGGTGCCAATCCGCTAATGGTGCCCTATTTCTTCTATCCACAAATGATAAAACCATAAAGTTTTGGAAGGTCCAGGAAAAGAAGATCAAGAAAATCTCTGAAATGAATGTTGACCCTTCAAAAGCTATGGGAAATGGCTGTGTTGCTAGTTCCAGCAATTCAAATAATCCTAGGACATATCTTGCTAATGGAGGATCTCTGGACAATTCATGCAATCATCTAAGCGATGACTTCTCATTCCCATCTGGGGGCATTCCCTCATTACGATTACCTGTGGTAGTAACCAACCATGAGACTAGCTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTACCATATCAATTCTATTTCAAATAACAGTGATGGTGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATCAGCAATCAAAGTTTCAATATTGTTGATGTAAAACCTGCAAACATGGAAGATCTGACTGAGGTTATAACATCAGCAGAGTTCCATCCTATGCATTGCAATATGTTGGCATACAGCAGTTCAAAGGGTTCAATACGACTTGTTGACTTGCGGCAATCAGCATTATGTGATTCTCATGCAAAACTATTTGAGGAACAGGAGGCCCCTGGATCCAGATCATTTTTCACAGAGATCATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATTCTTAGCCGTGATTACATGACTCTAAAGTTGTGGGACATTAATATGGATTCTGGTCCAGTTGCAACTTTCCAGGTTCATGAGTATCTAAGACCTAAGTTATGTGATTTATATGAGAATGACTCAATTTTTGACAAGTTCGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTTGCAACTGGTTCTTACAGCAACCTTTTCCGTGTGTTTGGTTGCACCGCAGGAAGTTCTGAAGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCCAACCCCTTCAAGACCATCAAGATCACTTGGGAGTAGTTTAACACGGGTTGTAAGACGAGGAGCAGAAAGTGCTAGTGCTGATGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTACTGCACCTAGCATGGCACCCAACTGAAAATTTAACTGCGTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCATAA 1551 0.4191 MNGGDEVVAAPAGPTQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGLRRDLERMDYPLSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANGALFLLSTNDKTIKFWKVQEKKIKKISEMNVDPSKAMGNGCVASSSNSNNPRTYLANGGSLDNSCNHLSDDFSFPSGGIPSLRLPVVVTNHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPMHCNMLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTAGSSEATTLEASKNPMRRQVPTPSRPSRSLGSSLTRVVRRGAESASADANGNSFDFTTKLLHLAWHPTENLTACAAANSLYMYYA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2096 516 SUPERFAMILY WD40 repeat-like 39 512 IPR036322 GO:0005515
Prci12g2096 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Prci12g2096 516 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 209 512 - -
Prci12g2096 516 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 16 516 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 SMART WD40_4 333 371 IPR001680 GO:0005515
Prci12g2096 516 SMART WD40_4 274 314 IPR001680 GO:0005515
Prci12g2096 516 SMART WD40_4 224 263 IPR001680 GO:0005515
Prci12g2096 516 SMART WD40_4 105 145 IPR001680 GO:0005515
Prci12g2096 516 SMART WD40_4 31 66 IPR001680 GO:0005515
Prci12g2096 516 SMART WD40_4 375 429 IPR001680 GO:0005515
Prci12g2096 516 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Prci12g2096 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 233 247 IPR018067 -
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 348 375 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 235 262 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 291 319 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 485 514 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 402 428 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 401 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 263 290 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 347 IPR000009 GO:0000159|GO:0019888
Prci12g2096 516 MobiDBLite consensus disorder prediction 442 464 - -
Prci12g2096 516 Gene3D - 36 201 IPR015943 GO:0005515
Prci12g2096 516 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 197 - -
Prci12g2096 516 Gene3D - 209 511 IPR015943 GO:0005515
Prci12g2096 516 PIRSF PPA2_B55 9 516 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2096 Prci-Chr12 38404663 38413063 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2096 K04354 - qsa:O6P43_018282 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0737 13 6127929 6136001 Prci12g2096 12 38404663 38413063 CCT
Prci12g2096 12 38404663 38413063 Prci13g0737 13 6127929 6136001 ECH
Prci12g2096 12 38404663 38413063 Prci12g2096 12 38404663 38413063 ECH