Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1913 ATGGATCTGATTACGGGTCTTCCCGATGATGTTGCCATGGACTGTTTGATTCGGGTTTCATTCGATCAGTTCCCCACCGTTGCGTCCGTTTGTAAGAACTGGAAGGCGGAGATTGAGATGCCGGAGTTTCTCCGCCGACGGAGGAGCGCCGGCCATACCCAGAAACTCATCGTCATGGTTCAGGCACGAGTCAATTTGGATAAACGAGTCAGTGCTTTGATGAAGGGTTCAGCCAACCCGATTTATCGTTTGAGTGTATGTGAGGCGAATTCGGGTCAGTGGACCGAGTTGCCGCCCCCTCCGGGTTCCTCTGGCGGGTTACCCATGTTCTGTCAAATAGCGGGTGTCGGGTACGACTTGGTTTTGATTGGCGGGTGGGACCCAAACTCGTGGAAGTCTTCGAATTCGGTGTTTATTTACAACTTCATGTCGGCCAAGTGGCGGCGTGGGGCGGACATGCCGGGTGGGGCGAGGACGTTCTTCGCCTGCGCGTCTGATTCCGAGCGGGTAGTTTACGTGGCCGGTGGGCACGATGACGAGAAGAACGCGTTAAGGTCGGCTTTATCCTATGACGTGGCAAGAGACGAGTGGGTCACACTTCCCGATATGGGAAGAGAGAGGGACGAGTGCAAGGCGGTTTTCCACCGTGAAAGTGGGAAGTTTCAGGTGATCGGCGGTTACTGCACGCAGATGCAAGGGCGGTTTGAGAGAAGCGCCGAAGCCTTTGACATTGCTTCGTGCAAGTGGGACCCGGTGGAAGAGGAGTTTCTTGAATCTGCCACGTGTCCGAGGACCTGCGTGAACGGCGGTGATGGAAGGAAAGTATACATGTGCAAGGGCGGTGACGTCGTGGCATTAGAAGATGACACGTGGGAAACTTTGGCGACGCTGCCACCTGAGATCCGGGAGGTGGCTTACATGAGTTCGGGGTTGGAGGGGACGTTGGTGGTGATTGGATCGAGTGGGTATGCTGAGCCATACATGGGCTTTGTATTGGACCTTAAGAGTAACAGTTGGAGAAAGTTGGAGAGCCCAATGGGCCACACTGGCCATGTTCAGTCAGGCTGTCTCTTGGAGATTTAG 1083 0.5476 MDLITGLPDDVAMDCLIRVSFDQFPTVASVCKNWKAEIEMPEFLRRRRSAGHTQKLIVMVQARVNLDKRVSALMKGSANPIYRLSVCEANSGQWTELPPPPGSSGGLPMFCQIAGVGYDLVLIGGWDPNSWKSSNSVFIYNFMSAKWRRGADMPGGARTFFACASDSERVVYVAGGHDDEKNALRSALSYDVARDEWVTLPDMGRERDECKAVFHRESGKFQVIGGYCTQMQGRFERSAEAFDIASCKWDPVEEEFLESATCPRTCVNGGDGRKVYMCKGGDVVALEDDTWETLATLPPEIREVAYMSSGLEGTLVVIGSSGYAEPYMGFVLDLKSNSWRKLESPMGHTGHVQSGCLLEI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1913 360 CDD F-box_AtAFR-like 3 47 - -
Prci12g1913 360 SUPERFAMILY Kelch motif 78 346 IPR015915 GO:0005515
Prci12g1913 360 PANTHER OS02G0208700 PROTEIN 2 360 IPR044595 GO:0080037|GO:2000762
Prci12g1913 360 Pfam F-box domain 6 36 IPR001810 GO:0005515
Prci12g1913 360 Pfam Kelch motif 170 204 IPR006652 GO:0005515
Prci12g1913 360 Pfam Kelch motif 114 154 IPR006652 GO:0005515
Prci12g1913 360 SMART kelc_smart 119 167 IPR006652 GO:0005515
Prci12g1913 360 SMART kelc_smart 170 217 IPR006652 GO:0005515
Prci12g1913 360 Gene3D - 45 358 IPR015915 GO:0005515
Prci12g1913 360 SUPERFAMILY F-box domain 1 50 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1913 Prci-Chr12 36736053 36737450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1913 7 197 Miscellaneous Gene Families AT4G33900 25.490 3.40e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1913 - - qsa:O6P43_018097 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0957 13 7945775 7947154 Prci12g1913 12 36736053 36737450 CCT
Prci12g1913 12 36736053 36737450 Prci12g1913 12 36736053 36737450 ECH